View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10401_7 (Length: 398)
Name: NF10401_7
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10401_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 270
Target Start/End: Original strand, 17328041 - 17328278
Alignment:
| Q |
33 |
tagaaggaaattgtggatgaagggttgaaactagcaccacctaagattcttccaataaggcttattgtgaggatgattattgtgtttaggatggttgtga |
132 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17328041 |
tagaaggaaattgtggatgaagggttaaaactagcaccacctaagattcttccaataaggcttattgtgaggatgattattgtgtttaggatggttgtga |
17328140 |
T |
|
| Q |
133 |
tgaataggcctggtagtgaaagtggttgaaggttgagaaatagagatgtttttgtagagagaattcttaatgttgagatgaagaaaacaaatattgatgt |
232 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17328141 |
tgaataagcctggtagtgaaagtggttgaaggttgagaaaaagagatgtttttgtagagagaattcttaatgttgagatgaagaaaacaaatattgatgt |
17328240 |
T |
|
| Q |
233 |
tagaattgcatctcctatggctgatttaatcactccca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17328241 |
tagaattgcatctcctatggctgatttaatcactccca |
17328278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 17328339 - 17328391
Alignment:
| Q |
329 |
attggtattggaacttggaagatgaaacactctcactcacttattttggatgt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17328339 |
attggtattggaacttggaagatgaaacactctcactcacatattttggatgt |
17328391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University