View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10401_8 (Length: 356)
Name: NF10401_8
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10401_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 37106493 - 37106138
Alignment:
| Q |
1 |
ttctgtttgtgttctgtggtttaaccttcggatttgaaggaggggaagtaacttatattattatc-aagattttgataaaacttgttggtctaattttaa |
99 |
Q |
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| T |
37106493 |
ttctgtttgtgttctgtggtttaacctttggatttgaaggaggggaagtaacttatattattatccaagattttgataaaacttgttggtgtaattttaa |
37106394 |
T |
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| Q |
100 |
agttgttgtttttgtgacagaggattaaatttatgattttatttacaagaaattgttatatgaatattttttacccttaaacatgattagcctaacgtaa |
199 |
Q |
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| T |
37106393 |
agttgttgtttttgtgacagacgattaaatttatgattt-atttaccacaaattgttatatgaatattttttacccttaaacatgattagcctaacctaa |
37106295 |
T |
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| Q |
200 |
tacttgataatggactttagtttgtgagattgcaaactgctactaatatttaagattattgcttttggttgcggatggattgagtaaaataatgttggta |
299 |
Q |
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| T |
37106294 |
tacttgataatggattttagtttgtgagattgcaaactgctactaatatttaagattattgcttttggttgcggatggattgagtaaaataatgttggta |
37106195 |
T |
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| Q |
300 |
attgttttttattcaaatggttttacttataaactttactttgttgatgaatttctc |
356 |
Q |
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| T |
37106194 |
attgttttttattcaaatgcttttacttataaactttactttgttgatgaatttctc |
37106138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 293
Target Start/End: Complemental strand, 37085765 - 37085587
Alignment:
| Q |
111 |
ttgtgacagaggattaaatttatgattttatttacaagaaattgttatatgaatattttttacccttaaacatgattagcctaacgtaatacttgataat |
210 |
Q |
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| T |
37085765 |
ttgtgacagaggattaaatttatggtttcatg----acaaagtgctaaattaatattttcaacccttaatcatgatcagcttaacctaatacttgattat |
37085670 |
T |
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| Q |
211 |
ggactttagtttgtgagattgcaaactgctactaatatttaagattattgcttttggttgcggatggattgagtaaaataatg |
293 |
Q |
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| T |
37085669 |
ggattctagtttgtgagattgctaactgcttcaaatatttgtgattattgtttttgattgctgatggattgagtaaaataatg |
37085587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 259
Target Start/End: Complemental strand, 37092270 - 37092173
Alignment:
| Q |
162 |
aatattttttacccttaaacatgattagcctaacgtaatacttgataatggactttagtttgtgagattgcaaactgctactaatatttaagattatt |
259 |
Q |
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| T |
37092270 |
aatattttctacccttaaacatgattagcctaacctaatacttaattgtggattttagtttgtgagattactacctgctactaatatttaaggttatt |
37092173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 37092131 - 37092085
Alignment:
| Q |
310 |
attcaaatggttttacttataaactttactttgttgatgaatttctc |
356 |
Q |
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| T |
37092131 |
attcaaatggttttacttatgaactttactttgttgatgaatttctc |
37092085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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