View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10401_low_1 (Length: 329)
Name: NF10401_low_1
Description: NF10401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10401_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 23458923 - 23458712
Alignment:
| Q |
3 |
tcaatccgggatgacaattttccatttggaaacttcgttgatacgtatttcattacagaaaagtatcgtgaagtatttgcgaagtgggaatcagaaaagt |
102 |
Q |
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| T |
23458923 |
tcaatcggggatgacaattttccatatgaagacttcgttgataagcatttcattacagaaaagtatcataaagaatttgcgaagtgggaatcagaaat-- |
23458826 |
T |
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| Q |
103 |
gttttcatgctttgctatcagcgcagattcaatctgcggcacttgttcgttgtctagaacaaaggtttggtgatttggaaaagaaatgtaagacttacat |
202 |
Q |
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| T |
23458825 |
-tttccatgttttgctatcagcgccgattcaatctgtggcacttgttcgttgtctagaacaaagttttggtgatttgaaaaagaaatgtaagacttacat |
23458727 |
T |
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| Q |
203 |
tgaagagaacactga |
217 |
Q |
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| T |
23458726 |
tgaagagaacgctga |
23458712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 23449090 - 23449169
Alignment:
| Q |
2 |
atcaatccgggatgacaattttccatttggaaacttcgttgatacgtatttcattacagaaaagtatcgtgaagtatttg |
81 |
Q |
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| T |
23449090 |
atcaatctgggatgacaattttccatttggagactttgttgataagcaattcattgcagaaaaggattgtgaagcatttg |
23449169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 23462827 - 23462775
Alignment:
| Q |
2 |
atcaatccgggatgacaattttccatttggaaacttcgttgatacgtatttca |
54 |
Q |
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| T |
23462827 |
atcaatctgggatgacaattttccatttggagactttgttgataagcatttca |
23462775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 31437616 - 31437729
Alignment:
| Q |
216 |
gagttggaggcttatgtctgatactaactccttgatgagccgtattttcaaaagtaggtactatcctcggagtaacttcttggaggcaaccataggatac |
315 |
Q |
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| T |
31437616 |
gagttggaggcttatgtctgatgctaactccttgatgagccgtattttcaaaagcaggtactatccccggagtaacttcttggaggcaaccataggatac |
31437715 |
T |
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| Q |
316 |
caaccaagttatgc |
329 |
Q |
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| T |
31437716 |
caaccaagttatgc |
31437729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 31192621 - 31192734
Alignment:
| Q |
216 |
gagttggaggcttatgtctgatactaactccttgatgagccgtattttcaaaagtaggtactatcctcggagtaacttcttggaggcaaccataggatac |
315 |
Q |
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| T |
31192621 |
gagttggaggcttatgtctgatgctaactccttgatgagccgtattttcaaaagtaggtactatccctggtgtaacgtcttggaggcaaccataggatac |
31192720 |
T |
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| Q |
316 |
caaccaagttatgc |
329 |
Q |
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| T |
31192721 |
caaccaagctatgc |
31192734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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