View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10402_high_1 (Length: 387)
Name: NF10402_high_1
Description: NF10402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10402_high_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 39811950 - 39812338
Alignment:
| Q |
1 |
gaagatatgtcttctgggagtggcaatgttctcacaactgtgttgaaactgattgacaaatatgacctatatggacatgtcgcataccctaaacatcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39811950 |
gaagatatgtcttctgggagtggcaatgttctcacaactgtgttgaaactgattgacaagtatgacctatatggacatgtcgcataccctaaacatcata |
39812049 |
T |
|
| Q |
101 |
gacaatctgatgtacctgagatatatagatttgctgctaaaacaaaggtatgtagaatatatgtacaaaacacacttcttctgcagtcgtaatgatatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812050 |
gacaatctgatgtacctgagatatatagatttgctgctaaaacaaaggtatgtagaatatatgtacaaaacacacttcttctgcagtcgtaatgatatag |
39812149 |
T |
|
| Q |
201 |
ctagctggctaactagtttgatatttttctcagggagtttttataaatcctgctttagtggaaccttttggtcttactttaattgaggtaagtcttaact |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812150 |
ctagccaactaactagtttgatatttttctcagggagttttcataaatcctgctttagtggaaccttttggtcttactttaattgaggtaagtcttaact |
39812249 |
T |
|
| Q |
301 |
aacttaccactttggtgacatattcacattttaatgt--tagtgttattaaatatgtgtttaaactcactcaggcagctgcacatggac |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812250 |
aacttaccactttggtgacatattcacattttaatgttatagtgttattaaatatgtgtttaaactcactcaggcagctgcacatggac |
39812338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 15799751 - 15799821
Alignment:
| Q |
232 |
agggagtttttataaatcctgctttagtggaaccttttggtcttactttaattgaggtaagtcttaactaa |
302 |
Q |
| |
|
|||| ||||| ||||||||||| |||| || ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
15799751 |
agggtgttttcataaatcctgcactagttgagccttttggtcttactttaattgaggtaggtattaactaa |
15799821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 15799402 - 15799460
Alignment:
| Q |
40 |
gtgttgaaactgattgacaaatatgacctatatggacatgtcgcataccctaaacatca |
98 |
Q |
| |
|
|||||||| ||||||| || |||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
15799402 |
gtgttgaagttgattgataagtatgacctctatggacaagttgcataccctaaacatca |
15799460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 47756745 - 47756669
Alignment:
| Q |
50 |
tgattgacaaatatgacctatatggacatgtcgcataccctaaacatcatagacaatctgatgtacctgagatatat |
126 |
Q |
| |
|
||||||| || |||||||| ||||| || || ||||| |||||||| || | |||||||||||| ||||| |||||| |
|
|
| T |
47756745 |
tgattgataagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcctgaaatatat |
47756669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University