View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10402_low_1 (Length: 648)
Name: NF10402_low_1
Description: NF10402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10402_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 34976866 - 34977510
Alignment:
| Q |
1 |
gacacggatgttggacacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtttgtacgat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34976866 |
gacacggatgttggaaacgataaaacactgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtctgtacgat |
34976965 |
T |
|
| Q |
101 |
a-----------------tacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttcatttcctcctcatacaca |
183 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976966 |
aacttaaccaatacaatatacaaaaatcacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttcatttcctcctcatacaca |
34977065 |
T |
|
| Q |
184 |
gcaacatgattaaaaacattgaatattcatcattttatacctcgacaaaatttacaagaggaaaacagaaagttaaatattaccttgaccaagcttaaat |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977066 |
gcaacatgattaaaaacattgaatattcatcattttatacctcgacaaaatttacaagaggaaaacagaaagttaaatattaccttgaccaagcttaaac |
34977165 |
T |
|
| Q |
284 |
ttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactacaaaaagacacaatcaaaatcaacatt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977166 |
ttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactacaaaaagacacaatcaaaatcaacatt |
34977265 |
T |
|
| Q |
384 |
acattactaaccaattcagtttcataacagaaagatgtgaaatgtaatttaaatttgattgattattaattaattaccttcaacttgatctccattatca |
483 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34977266 |
acattactaaccaattcagtttcataagagaaagatgtgaaatgtaatttaaatttgattgatt----attaattaccttcaacttgatctccattatca |
34977361 |
T |
|
| Q |
484 |
ggagtttcccacccttcaccttccttaacaagcttcttcttcaaaccattcttcccaatctccttctcctcaccaactttctgagtcggactcatcacct |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34977362 |
ggagtttcccacccttcaccttccttaacaagcttcttcttcaaaccattcttcccaatctccttctcctcgccaactttctgagtcggactcatcacct |
34977461 |
T |
|
| Q |
584 |
cctcttcctctggcatttccatgtttcctgctgttggaaactcgaaatc |
632 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977462 |
cctcttcctctggcatttccatgtttcctgctgttggaaactcgaaatc |
34977510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 557
Target Start/End: Original strand, 3497496 - 3497573
Alignment:
| Q |
480 |
atcaggagtttcccacccttcaccttccttaacaagcttcttcttcaaaccattcttcccaatctccttctcctcacc |
557 |
Q |
| |
|
||||||||| ||||| ||||||||||| || | |||||||||||||||||| | ||| || || ||||| |||||||| |
|
|
| T |
3497496 |
atcaggagtatcccaaccttcaccttctttgagaagcttcttcttcaaaccttgctttccgatttccttttcctcacc |
3497573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 358
Target Start/End: Original strand, 3497274 - 3497367
Alignment:
| Q |
265 |
accttgaccaagcttaaatttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaactaca |
358 |
Q |
| |
|
|||||| |||||| | || |||||||| || |||||||| | ||| || ||||| || || ||||||||||| |||| ||||||||||||||| |
|
|
| T |
3497274 |
accttgtccaagcgtgaaattgaaagtagttcccctatctctgctagaatcaaacttcgtaccatcaagcaacgttccggtataatgaactaca |
3497367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 18850563 - 18850620
Alignment:
| Q |
299 |
ctatcacggctcgagtcaaatttggttccatcaagcaaaattccagtataatgaacta |
356 |
Q |
| |
|
|||||||| || || |||||||| ||||||||||||||| ||||||| || ||||||| |
|
|
| T |
18850563 |
ctatcacgacttgaatcaaatttagttccatcaagcaaagttccagtgtagtgaacta |
18850620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University