View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10402_low_4 (Length: 304)
Name: NF10402_low_4
Description: NF10402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10402_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 44858768 - 44858684
Alignment:
| Q |
19 |
ctataatcggtaccaaatcctttgaaacgatgttccatttacacacttgcttgaacacatcgcgggattgcggatcatcacgtct |
103 |
Q |
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| T |
44858768 |
ctataatcggtaccaaatcctttgaaacgatgttccatttacacactagcttgaacacatcgcgggattgcggatcatcacgtct |
44858684 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 44858562 - 44858493
Alignment:
| Q |
225 |
caaattcattcataccgagacagtattcacccttggaataaccgattcgtttgccttcatcatcttcttc |
294 |
Q |
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| T |
44858562 |
caaattcattcataccgagacagtattcacccttggaataaccgattcgtttgccttcatcatcttcttc |
44858493 |
T |
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