View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10402_low_5 (Length: 255)
Name: NF10402_low_5
Description: NF10402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10402_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 39812560 - 39812325
Alignment:
| Q |
20 |
ccacaagcaaaccattgttgagggcctaacattataacaaagaatcacaacgtcatttatttttccaatgtcttgattacaactaagaaaatagtacata |
119 |
Q |
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| T |
39812560 |
ccacaagcaaaccattgttgagggcctaacattataacaaagaatcacaacgtcatttatttttccaatgtcttgattacaactaagaaaatagtacatg |
39812461 |
T |
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| Q |
120 |
ttgtaaaatataggaacttcctagtatgcatattttaactcagtatgatatatataaagttaatttttcaattacccgattaatgtcaaccggtccacca |
219 |
Q |
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| T |
39812460 |
ttgtaaaatataggaacttcctagtatgcatattttaactcagtatgatatatataaagttaatttttcaattacccgattaatgtcaaccggtccacca |
39812361 |
T |
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| Q |
220 |
tttttagtggccaccattggcagtccatgtgcagct |
255 |
Q |
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| T |
39812360 |
tttttagtggccaccattggcagtccatgtgcagct |
39812325 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 15799971 - 15799911
Alignment:
| Q |
191 |
ttacccgattaatgtcaaccggtccaccatttttagtggccaccattggcagtccatgtgc |
251 |
Q |
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| T |
15799971 |
ttacccgatgaatgtcgacaggtccaccatttttagtggccaccattggaaggccatgtgc |
15799911 |
T |
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