View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10403_6 (Length: 339)

Name: NF10403_6
Description: NF10403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10403_6
NF10403_6
[»] chr1 (4 HSPs)
chr1 (21-100)||(37106711-37106790)
chr1 (184-329)||(37106476-37106627)
chr1 (45-92)||(37092805-37092852)
chr1 (53-92)||(37086106-37086145)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 37106790 - 37106711
Alignment:
Q  21 cttttttgttctctcatcaataacaacaacgactgcaaccatgcttgtttaccaggatcttcttacaggtaataaaaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37106790 cttttttgttctctcatcaataacaacaacgactgcaaccatgcttgtttaccaggatcttcttacaggtaataaaaacc 37106711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 37106627 - 37106476
Alignment:
Q  184 aaatacttgttcctgtatttagtgtatgaatgaattttgtgttatgtttctcataaacctcactttgg-------nnnnnnnngtcctnnnnnnncagag 276  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||               |||||       |||||    
T  37106627 aaatacttgatcctgtatttagtgtatgaatgaattttgtgttatgtttctcacaaacctcactttggttcttttttttttttgtcct-aaaaaacagag 37106529  T
Q  277 aggttttaaggttttttctaaaagaacatgaagttttctgtttgtgttctgtg 329  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37106528 aggttttaaggttttttcaaaaagaacatgaagttttctgtttgtgttctgtg 37106476  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 37092852 - 37092805
Alignment:
Q  45 aacaacgactgcaaccatgcttgtttaccaggatcttcttacaggtaa 92  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||    
T  37092852 aacaacaaccgcaaccatgcttgtttaccaggatcttcttacaggtaa 37092805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 37086145 - 37086106
Alignment:
Q  53 ctgcaaccatgcttgtttaccaggatcttcttacaggtaa 92  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37086145 ctgcaaccatgcttgtttaccaggatcttcttaccggtaa 37086106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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