View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10404_1 (Length: 584)
Name: NF10404_1
Description: NF10404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10404_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 6650050 - 6650593
Alignment:
| Q |
1 |
ccggtaataattttaaaaatagaagcaatagaatgtaatcgcatgtgtcggttttcaacactaacgcatgtcagacaccggacatgcataaatctaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6650050 |
ccggtaataattttaaaaatagaagcaatagaatgtaatcacatgtgtaggtgttcaacactaacacatgtcagacaccggacatgcataaatctaaag- |
6650148 |
T |
|
| Q |
101 |
gttagcgaaagtataacaaattgcagggtggctacaattcaggagaattttacataatcaacatgaattgatgaataaatctacaacactaccaccaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6650149 |
-----------tataacaaattgcagggtggctacaattcaggagaattttacataatcaacatgaattgatgaataaatctacaacactaccaccaaat |
6650237 |
T |
|
| Q |
201 |
tcaaacctaaaatactttcattaaaaaacaactcacctttccaagaccagcatgaacaggagccaacccaacattacatttatagtcaacatgaatagac |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6650238 |
tcaaacctaaaataatttcattaaaaaacaactcacctttccaagaccagcatgaacaggagccaacccaacattacatttatagtcaacatgaatagac |
6650337 |
T |
|
| Q |
301 |
caagcaatggtaccattggtttcaaatgacaaaaaggttttatcagaacaaacatagattcttccgtcatctcctataagtggtttagaaagcaaatgac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6650338 |
caagcaatggtaccattggtttcaaatgacaaaaaggttttatcagaacaaacatagattcttccgtcatctcctataagtggtttagaaagcaaatgac |
6650437 |
T |
|
| Q |
401 |
gtgaacacacagaacacaatgccgcaggaactaatgacaatgttataaggagaagaagtaaccatgtcactaacatcatagtaaagaaacaaagtttgtg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6650438 |
gtgaacacacagaacacaatgccgcaggaactaatgacaatgttacaaggagaagaagtaaccatgtcactaacatcatagtaaagaaacaaagtttgtg |
6650537 |
T |
|
| Q |
501 |
acaacagagagaaacatagtgtgtgttggttcatgcatgtgttgtgtgacggttat |
556 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
6650538 |
acaacagagagaaacatagtgtgtgttgattcatgcatgtgttgtgtgacagttat |
6650593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University