View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10406_high_1 (Length: 510)
Name: NF10406_high_1
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10406_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 210 - 500
Target Start/End: Original strand, 24524884 - 24525170
Alignment:
| Q |
210 |
aataactataagagtaactgataatatcttagattttagtaactgataatttaccatctattctgagttgcagtgacttgatatattaaaccagacgttg |
309 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
24524884 |
aataactataagagtaactgatagtatcttagattttagtaactgataattgaccatctattatgagttgcagtgacttcatatattaaaccagacgttg |
24524983 |
T |
|
| Q |
310 |
gcagtaataaacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatggaagttccttcctatga |
409 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24524984 |
gcagtaata---aagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacat-gaagttccttcctatga |
24525079 |
T |
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| Q |
410 |
taatacatgaattacaatcagctgcagtcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctg |
500 |
Q |
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| T |
24525080 |
taatacatgcattgtaattagctacaatcattcctaaagataaaaagctaattaatcgagaatgataatttctccatcttcccaatctctg |
24525170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 24524832 - 24524885
Alignment:
| Q |
15 |
accaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaa |
68 |
Q |
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| T |
24524832 |
accaataacccctctttgatatcagcaatgaacctttctagttgcaaaaacaaa |
24524885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 290 - 500
Target Start/End: Original strand, 9123088 - 9123302
Alignment:
| Q |
290 |
atatattaaaccagacgttggcagtaataaa---------caagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatata |
380 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123088 |
atatcttaaaccagacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatata |
9123187 |
T |
|
| Q |
381 |
atttcttacatggaagttccttcctatgataatacatgaattacaatcagctgcagtcattcctatcgataaaaagctaattaatcgagaatgataattt |
480 |
Q |
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| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9123188 |
aattcttacat-gaagttccttcctttgataatac----attacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataattt |
9123282 |
T |
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| Q |
481 |
ctccttcttcccaatctctg |
500 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9123283 |
ctccttcttcccaatctctg |
9123302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 290 - 500
Target Start/End: Original strand, 9131195 - 9131409
Alignment:
| Q |
290 |
atatattaaaccagacgttggcagtaataaa---------caagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatata |
380 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131195 |
atatcttaaaccagacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatata |
9131294 |
T |
|
| Q |
381 |
atttcttacatggaagttccttcctatgataatacatgaattacaatcagctgcagtcattcctatcgataaaaagctaattaatcgagaatgataattt |
480 |
Q |
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| T |
9131295 |
aattcttacat-gaagttccttcctttgataatac----attacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataattt |
9131389 |
T |
|
| Q |
481 |
ctccttcttcccaatctctg |
500 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9131390 |
ctccttcttcccaatctctg |
9131409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 9122871 - 9123095
Alignment:
| Q |
15 |
accaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggactaataattgctatgc-caatccaagaaaacaccttt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || || || || | |
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| T |
9122871 |
accaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataatatctttgatcacaccttaaatgcaacac- |
9122969 |
T |
|
| Q |
114 |
gatcacaccttagattacagtaacttatagttgaccatcaataactgttgaatgagtatcaatggttcacaaacatcaaataaagacattggcagtaata |
213 |
Q |
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|| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9122970 |
-ataatatcttagattacagtaacttataattgaccatcaataactgttgaatgagtatcaatgcttcacaaacatcaaataaagacattggcagtaata |
9123068 |
T |
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| Q |
214 |
actataagagtaactgataatatctta |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9123069 |
actataagagtaactgataatatctta |
9123095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 9130978 - 9131202
Alignment:
| Q |
15 |
accaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggactaataattgctatgc-caatccaagaaaacaccttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || || || || | |
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| T |
9130978 |
accaataacccctctttgatatcaccaatgaacctttctagttgcaaaaacaaactacttggtctaataatatctttgatcacaccttaaatgcaacac- |
9131076 |
T |
|
| Q |
114 |
gatcacaccttagattacagtaacttatagttgaccatcaataactgttgaatgagtatcaatggttcacaaacatcaaataaagacattggcagtaata |
213 |
Q |
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|| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9131077 |
-ataatatcttagattacagtaacttataattgaccatcaataactgttgaatgagtatcaatgcttcacaaacatcaaataaagacattggcagtaata |
9131175 |
T |
|
| Q |
214 |
actataagagtaactgataatatctta |
240 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
9131176 |
actataagagtaactgataatatctta |
9131202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 432 - 495
Target Start/End: Complemental strand, 9039096 - 9039033
Alignment:
| Q |
432 |
tgcagtcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
495 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9039096 |
tgcagtcattcctaaagataaaaaactaattaatcgagaatgataatttctccttcttcccaat |
9039033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 490
Target Start/End: Complemental strand, 39815150 - 39815109
Alignment:
| Q |
449 |
ataaaaagctaattaatcgagaatgataatttctccttcttc |
490 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39815150 |
ataaaaagctaattaatcgagaatgataacttctccttcttc |
39815109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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