View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10406_low_1 (Length: 580)
Name: NF10406_low_1
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10406_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 40 - 563
Target Start/End: Original strand, 36409453 - 36409960
Alignment:
| Q |
40 |
ttttgtctatgatccatccacttacataccggtttctcaata-gnnnnnnntcgcaatcatttcttgctggggtcctcgagactttgaactatgaccggg |
138 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36409453 |
ttttttctatgatccatccacttacataccggtttctcaatttgaaaaaaatcgcaatcatttcttgctggggtcctcgagactttgaactatgaccggg |
36409552 |
T |
|
| Q |
139 |
gtggaaatccaatttgataggatagaccaatg-----gaagaaagaaaggatcaatttgaatatgaaaataaactttatgaaaagtgaaaggatttattt |
233 |
Q |
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| T |
36409553 |
gtggaaatccaatttgataggatagaccaatggaatggaagaaagaaagaatcaatttgaatatgaaaataaactttatgaaaagtgaaaggatttattt |
36409652 |
T |
|
| Q |
234 |
gagaaagcaacaaagtataaagcgaatctctattataatatattgtcttccaaattttgctataattgacgattttctaaagatttgctttttaatgggc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36409653 |
gagaaagcaacaaagtataaagcgaatctctattataatatattgtcttccaaattttgctataattgacgattttctaaagatttgctttttaataggc |
36409752 |
T |
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| Q |
334 |
acaacaatgttgcaatttgctttatcgattgattctttgaaaaatatatgcattgtcctgtctttattgaatatgaacctcatcgaaattgatcagattc |
433 |
Q |
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| T |
36409753 |
acaacaatgttgcaatttgctttatcaattgattctttgaaaaatatatgcattgtcttgtctttattg----------------------atcagattc |
36409830 |
T |
|
| Q |
434 |
atggacaagtttgagtctaaaaattaacttgatctaatgtgaagaccggattcgtcacatacaaaccaatctaaaacgtgatttgtacatccttagttcc |
533 |
Q |
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| T |
36409831 |
atggacaagtttgagtctaaaaattaacttgatctaatgtgaagaccggattcgtcacatacaacccaatctaaaacgtcatttgtacatccttagttcc |
36409930 |
T |
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| Q |
534 |
ggtataggaggattcaacaatactaaagtt |
563 |
Q |
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| T |
36409931 |
ggtataggaggattcaacaatactaaagtt |
36409960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 36409403 - 36409440
Alignment:
| Q |
9 |
tattgaaaatgagtttaactttagccaaaacttttgtc |
46 |
Q |
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| T |
36409403 |
tattgaaaatgagtttaactttagccaaaacttttgtc |
36409440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 5586709 - 5586660
Alignment:
| Q |
409 |
aacctcatcgaaattgatcagattcatggacaagtttgagtctaaaaatt |
458 |
Q |
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| T |
5586709 |
aacctcaccgaatttgatcaggatcatggacatgtttgagtctaaaaatt |
5586660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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