View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10406_low_3 (Length: 470)

Name: NF10406_low_3
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10406_low_3
NF10406_low_3
[»] chr8 (3 HSPs)
chr8 (412-459)||(25357218-25357265)
chr8 (359-411)||(7094444-7094496)
chr8 (359-411)||(7098177-7098229)
[»] chr3 (2 HSPs)
chr3 (359-411)||(8377305-8377357)
chr3 (194-238)||(5242916-5242961)
[»] chr1 (4 HSPs)
chr1 (359-411)||(22362532-22362584)
chr1 (359-411)||(33885917-33885970)
chr1 (359-411)||(33958282-33958335)
chr1 (359-408)||(41314548-41314597)
[»] chr7 (4 HSPs)
chr7 (358-427)||(1609114-1609183)
chr7 (359-427)||(2186864-2186932)
chr7 (358-413)||(21270163-21270216)
chr7 (361-427)||(19633211-19633277)
[»] chr5 (2 HSPs)
chr5 (359-427)||(37627683-37627751)
chr5 (359-427)||(37806806-37806874)
[»] chr4 (1 HSPs)
chr4 (358-403)||(11993129-11993173)


Alignment Details
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 25357265 - 25357218
Alignment:
Q  412 aaataggaggttacactgatctttttaaacacgttgcttttgttctct 459  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  25357265 aaataggaggttacaccgatctttttaaacacgttgcttttgttctct 25357218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 7094444 - 7094496
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaag 411  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  7094444 tgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaag 7094496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 7098177 - 7098229
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaag 411  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  7098177 tgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaag 7098229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 8377357 - 8377305
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaag 411  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  8377357 tgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaag 8377305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 5242916 - 5242961
Alignment:
Q  194 aaatattcttacttggtgat-aagtctaattgttagtccttaaggt 238  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  5242916 aaatagtcttacttggtgatgaagtctaattgctagtccttaaggt 5242961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 22362584 - 22362532
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaag 411  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  22362584 tgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaag 22362532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 33885970 - 33885917
Alignment:
Q  359 tgaaataaccttcccactaacttccttcct-aaatgagtggcactatacttaag 411  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||| ||||||    
T  33885970 tgaaataaccctcccactaactcccttcctaaaaagagtggcactatgcttaag 33885917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 33958282 - 33958335
Alignment:
Q  359 tgaaataaccttcccactaacttccttcct-aaatgagtggcactatacttaag 411  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||| ||||||    
T  33958282 tgaaataaccctcccactaactcccttcctaaaaagagtggcactatgcttaag 33958335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 41314548 - 41314597
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatactt 408  Q
    |||||||||  |||||||||||  ||||||| ||||||||||||||||||    
T  41314548 tgaaataactctcccactaactctcttcctagatgagtggcactatactt 41314597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 427
Target Start/End: Original strand, 1609114 - 1609183
Alignment:
Q  358 atgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaagaaataggaggttacac 427  Q
    ||||||||||  |||||||||||  ||||||| |||||||||||||||||| || ||| | |||||||||    
T  1609114 atgaaataactatcccactaactctcttcctagatgagtggcactatacttgaggaatggtaggttacac 1609183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 2186932 - 2186864
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaagaaataggaggttacac 427  Q
    |||||||||  |||||||||||  ||||||| |||||||||||||||||| || ||| | |||||||||    
T  2186932 tgaaataactctcccactaactctcttcctagatgagtggcactatacttgaggaatggtaggttacac 2186864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 21270163 - 21270216
Alignment:
Q  358 atgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaagaa 413  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||| ||||||||    
T  21270163 atgaaataacct-cccactaacc-ccttcctaaatgagtggcactatgcttaagaa 21270216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 19633211 - 19633277
Alignment:
Q  361 aaataaccttcccactaacttccttcctaaatgagtggcactatacttaagaaataggaggttacac 427  Q
    |||||||  |||||||||||  ||||||| |||||||||||||||||| || ||| | |||||||||    
T  19633211 aaataactctcccactaactctcttcctagatgagtggcactatacttgaggaatggtaggttacac 19633277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 37627683 - 37627751
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaagaaataggaggttacac 427  Q
    |||||||||  |||||||||||  ||||||| |||||||||||||||||| || ||| | |||||||||    
T  37627683 tgaaataactctcccactaactctcttcctagatgagtggcactatacttgaggaatggtaggttacac 37627751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 37806806 - 37806874
Alignment:
Q  359 tgaaataaccttcccactaacttccttcctaaatgagtggcactatacttaagaaataggaggttacac 427  Q
    |||||||||  |||||||||||  ||||||| |||||||||||||||||| || ||| | |||||||||    
T  37806806 tgaaataactctcccactaactctcttcctagatgagtggcactatacttgaggaatggtaggttacac 37806874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 11993129 - 11993173
Alignment:
Q  358 atgaaataaccttcccactaacttccttcctaaatgagtggcacta 403  Q
    |||||||||||| |||||||||| |||||||||| |||||||||||    
T  11993129 atgaaataacct-cccactaactcccttcctaaaagagtggcacta 11993173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University