View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10406_low_4 (Length: 432)
Name: NF10406_low_4
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10406_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 316 - 427
Target Start/End: Complemental strand, 42635569 - 42635458
Alignment:
| Q |
316 |
gacgtgatgcacatttttgaacgttcatttatcatatttacctcctaatttgtttatttctatttttgatgcaggctgtggttgttaatgaggtggataa |
415 |
Q |
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| T |
42635569 |
gacgtgatgcacatttttgaacgttcatttatcatatttacctcctaatttgtttatttctatttttgatgcaggctgtggttgttaatgaggtggataa |
42635470 |
T |
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| Q |
416 |
tttcttctcact |
427 |
Q |
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| T |
42635469 |
tttcttttcact |
42635458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 42635824 - 42635724
Alignment:
| Q |
19 |
gtgtcaggctccagatgcatcttcaatatgaagtactccagacgcattttcaatatgaagtgtctatgctacataatctttaggaggtggtaagtgagct |
118 |
Q |
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| T |
42635824 |
gtgtcaggctccagacgcatcttcaatatgaagtgctctagacgcatcttcagtatgaagtgtctatgctacataatctttaggaggtggtaagtgagct |
42635725 |
T |
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| Q |
119 |
t |
119 |
Q |
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| T |
42635724 |
t |
42635724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 42635724 - 42635686
Alignment:
| Q |
185 |
tatggaggtatgtatacttatgaacagctattgtttcaa |
223 |
Q |
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| T |
42635724 |
tatggaggtatgtatacttatgaacagctattgtttcaa |
42635686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 7228593 - 7228671
Alignment:
| Q |
153 |
cacttgtccaatcttttgtctcagcacccaaatatggaggtatgtatacttatgaacagctattgtttcaatcttttca |
231 |
Q |
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| T |
7228593 |
cacttgtccaaccttttgtctcagcacccaaatatgaaggtatgtatacttatcagcatctattgtttcaaccttttca |
7228671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 7228945 - 7228989
Alignment:
| Q |
369 |
ttatttctatttttgatgcaggctgtggttgttaatgaggtggat |
413 |
Q |
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| T |
7228945 |
ttatttatttttctgatgcaggctgtggttgttaatgaggtggat |
7228989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 49599139 - 49599089
Alignment:
| Q |
153 |
cacttgtccaatcttttgtctcagcacccaaatatggaggtatgtatactt |
203 |
Q |
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| T |
49599139 |
cacttgtccaaccttttgtctcagcacccaaatatgaaggtatgtatactt |
49599089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 413
Target Start/End: Complemental strand, 49598832 - 49598801
Alignment:
| Q |
382 |
tgatgcaggctgtggttgttaatgaggtggat |
413 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
49598832 |
tgatgcaggctgtggttgttaatgaggtggat |
49598801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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