View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10406_low_5 (Length: 416)

Name: NF10406_low_5
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10406_low_5
NF10406_low_5
[»] chr8 (11 HSPs)
chr8 (69-389)||(10623061-10623379)
chr8 (47-102)||(18393548-18393603)
chr8 (25-87)||(1226180-1226243)
chr8 (1-43)||(10623378-10623420)
chr8 (25-87)||(15131943-15132005)
chr8 (25-63)||(18603045-18603083)
chr8 (25-87)||(28421166-28421228)
chr8 (50-101)||(27401934-27401985)
chr8 (25-62)||(15850441-15850478)
chr8 (34-87)||(44502416-44502469)
chr8 (112-196)||(15850517-15850601)
[»] chr1 (6 HSPs)
chr1 (25-198)||(48632557-48632730)
chr1 (28-102)||(3387765-3387838)
chr1 (30-87)||(126376-126435)
chr1 (25-81)||(32740978-32741034)
chr1 (29-59)||(7021547-7021577)
chr1 (46-87)||(16426557-16426598)
[»] chr2 (7 HSPs)
chr2 (25-87)||(34409556-34409618)
chr2 (25-81)||(9929780-9929836)
chr2 (25-87)||(26576186-26576248)
chr2 (25-74)||(32200817-32200866)
chr2 (29-104)||(15990047-15990123)
chr2 (29-189)||(44649945-44650106)
chr2 (25-80)||(13039011-13039066)
[»] scaffold0019 (1 HSPs)
scaffold0019 (25-87)||(70045-70108)
[»] chr6 (6 HSPs)
chr6 (25-87)||(12844028-12844090)
chr6 (25-87)||(57121-57184)
chr6 (25-79)||(14494414-14494468)
chr6 (25-74)||(17540155-17540204)
chr6 (25-87)||(19542263-19542325)
chr6 (29-87)||(17261719-17261776)
[»] chr4 (6 HSPs)
chr4 (25-87)||(3419977-3420039)
chr4 (32-101)||(2641251-2641321)
chr4 (25-61)||(31734644-31734680)
chr4 (25-81)||(40289127-40289183)
chr4 (31-85)||(44507814-44507869)
chr4 (25-87)||(45612414-45612477)
[»] chr3 (6 HSPs)
chr3 (29-196)||(27063757-27063924)
chr3 (25-101)||(17715818-17715895)
chr3 (25-101)||(19017047-19017124)
chr3 (25-63)||(11410833-11410871)
chr3 (25-63)||(43921918-43921956)
chr3 (26-104)||(32883532-32883609)
[»] chr5 (3 HSPs)
chr5 (25-86)||(40838028-40838089)
chr5 (25-87)||(32676610-32676673)
chr5 (38-85)||(41815598-41815646)
[»] chr7 (6 HSPs)
chr7 (28-84)||(11820508-11820563)
chr7 (25-87)||(37338738-37338800)
chr7 (28-101)||(48598420-48598491)
chr7 (40-82)||(6439873-6439915)
chr7 (25-83)||(32716489-32716546)
chr7 (25-81)||(46532985-46533041)
[»] scaffold0325 (1 HSPs)
scaffold0325 (40-104)||(12986-13051)
[»] scaffold1723 (1 HSPs)
scaffold1723 (120-196)||(406-482)
[»] scaffold0012 (1 HSPs)
scaffold0012 (46-86)||(209315-209355)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 69 - 389
Target Start/End: Complemental strand, 10623379 - 10623061
Alignment:
Q  69 gttatagacattaaagttggtcacaatgtttttagcnnnnnnngatagtacatggataaataaaagtaagatattgtggtatcttgttttataatttctt 168  Q
    ||||||||||||||||||||||||||||||||||||       |||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10623379 gttatagacattaaagttggtcacaatgtttttagctttttt-gatactaaatggataaataaaagtaagatattgtggtatcttgttttataatttctt 10623281  T
Q  169 tgaaagaaataagttgctcaagttagattcacatattcatannnnnnnnnnnnnnnnnagaccttctataaataagttagatgaacatatatatattttt 268  Q
    |||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||| |||||||    
T  10623280 tgaaagaaataagttgctcaagttagattcacatattcatatttttattttcatttt-agaccttctataaataagttagatgaacatatatgtattttt 10623182  T
Q  269 cgatgtcctatgttcttaacattagcgatgtcgacaaatctatgtaagtgttgtttcaggtgtctctggcagagtgcatgcttaataggcaacaacactc 368  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||    
T  10623181 cgatgtcctatgttcttaacattagcgatgtcgacgaatctatgtaagtgttgtttcaggtgtctgtgacggaatgcatgcttaataggcaacaacactc 10623082  T
Q  369 tctctgtccatcgacatcgac 389  Q
    |||||||||||||||||||||    
T  10623081 tctctgtccatcgacatcgac 10623061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 18393548 - 18393603
Alignment:
Q  47 gagaaatgttgatcaatgaagggttatagacattaaagttggtcacaatgttttta 102  Q
    ||||||||||||||||| ||||||||||||||||||||||| | |||| |||||||    
T  18393548 gagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgttttta 18393603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 1226243 - 1226180
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatga-agggttatagacattaaagttg 87  Q
    |||||||||||| ||||||||||||||||||| |||||| | ||| ||||||| ||||||||||    
T  1226243 atacaagagttaaatatgtgttgagaaatgttaatcaattagaggtttatagaaattaaagttg 1226180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10623420 - 10623378
Alignment:
Q  1 tctctcttgctttcatagaagcatatacaagagttacatatgt 43  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  10623420 tctctcttgcttccatagaggcatatacaagagttacatatgt 10623378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 15131943 - 15132005
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||| ||||||||||||| || |||||| ||||||||| | ||||||||||||||| |||||    
T  15131943 atacaggagttacatatgtttttagaaatattgatcaattaggggttatagacattatagttg 15132005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 18603045 - 18603083
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaat 63  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  18603045 atacaagagttacatatgttttgagaaatgttgatcaat 18603083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 28421228 - 28421166
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||| | ||||||||| ||||||||| |  |||||||||||||| |||||    
T  28421228 atacaagagttacatatattttgagaaatcttgatcaattagtggttatagacattatagttg 28421166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 27401985 - 27401934
Alignment:
Q  50 aaatgttgatcaatgaagggttatagacattaaagttggtcacaatgttttt 101  Q
    ||||||||||||| || ||||||||||||||||||||| | |||| ||||||    
T  27401985 aaatgttgatcaacgaggggttatagacattaaagttgattacaacgttttt 27401934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 15850441 - 15850478
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaa 62  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  15850441 atacaagagttacatatgttttgaaaaatgttgatcaa 15850478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 44502469 - 44502416
Alignment:
Q  34 ttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    |||||||||| |||||||||||||||  || | ||||||||||||||| |||||    
T  44502469 ttacatatgttttgagaaatgttgattgattaggggttatagacattatagttg 44502416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 15850517 - 15850601
Alignment:
Q  112 gatagtacatggataaataaaagtaagatattgtggtatcttgttttataatttctttgaaagaaataagttgctcaagttagat 196  Q
    ||||||| ||| ||||||||| || | ||| |||| ||||||||||||||| || ||  || ||||||| |||||||| ||||||    
T  15850517 gatagtagatgaataaataaatgtcaaatactgtgatatcttgttttataactttttctaatgaaataatttgctcaaattagat 15850601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 48632557 - 48632730
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatga-agggttatagacattaaagttggtcacaatgtttttagcnnnnnnngatagtacatgg 123  Q
    ||||||||||| ||||||||||||||||||||||||||| |  |||||||||| |||||||||| | |||| |||||||||       ||||||| | |     
T  48632557 atacaagagttgcatatgtgttgagaaatgttgatcaattacggggttatagaaattaaagttgattacaacgtttttagc-ttttttgatagtagaaga 48632655  T
Q  124 ataaataaaagtaagatattgtggtatcttgttttataatttctttgaaagaaataagttgctcaagttagattc 198  Q
    ||||||||| || | ||| | ||||||||||||||| || || ||| || |||||||  ||||||||||| ||||    
T  48632656 ataaataaaggtcaaatactatggtatcttgttttagaacttttttcaatgaaataaactgctcaagttaaattc 48632730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 3387838 - 3387765
Alignment:
Q  28 caagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttggtcacaatgttttta 102  Q
    ||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||| | |||| |||||||    
T  3387838 caagagttaaagatgtgt-gagaaatgttgatcaatcaagggttatagacattaaagttgattacaacgttttta 3387765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 126435 - 126376
Alignment:
Q  30 agagttacatatgtgttgagaaatgttgatcaat--gaagggttatagacattaaagttg 87  Q
    |||||||||||||| |||||||||||||||||||  |  |||||||||||||||||||||    
T  126435 agagttacatatgttttgagaaatgttgatcaattaggggggttatagacattaaagttg 126376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 32741034 - 32740978
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacatta 81  Q
    ||||||||||||||||||| ||| |||||||||||||||   |||||||||||||||    
T  32741034 atacaagagttacatatgttttgtgaaatgttgatcaattgggggttatagacatta 32740978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 7021547 - 7021577
Alignment:
Q  29 aagagttacatatgtgttgagaaatgttgat 59  Q
    |||||||||||||||||||||||||||||||    
T  7021547 aagagttacatatgtgttgagaaatgttgat 7021577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 16426598 - 16426557
Alignment:
Q  46 tgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  16426598 tgagaaatgttgatcaacgaggagttatagacattaaagttg 16426557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 34409556 - 34409618
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |||||    
T  34409556 atacaagagttacatatgttttgagaaatgttgatcaattaggggttatagacattatagttg 34409618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 9929836 - 9929780
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacatta 81  Q
    ||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||    
T  9929836 atacaagagttacatatgttttgagaaatgttgatcaaataggggttatagacatta 9929780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 26576248 - 26576186
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||| |||||||||||||||| || |  |||||||||||||| |||||    
T  26576248 atacaagagttacatatgttttgagaaatgttgatcgattagtggttatagacattatagttg 26576186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 32200817 - 32200866
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttata 74  Q
    ||||||||||||||||||| |||||||||| |||||||| || |||||||    
T  32200817 atacaagagttacatatgttttgagaaatgctgatcaattaatggttata 32200866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 15990047 - 15990123
Alignment:
Q  29 aagagttacatatgtgttgagaaatgttgatcaa-tgaagggttatagacattaaagttggtcacaatgtttttagc 104  Q
    |||||||||||||||||||||||||||||| ||| |   |||||||||| |||||||||  ||||||  ||||||||    
T  15990047 aagagttacatatgtgttgagaaatgttgaccaatttgggggttatagaaattaaagttaatcacaacatttttagc 15990123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 44649945 - 44650106
Alignment:
Q  29 aagagttacatatgtgttgagaaatgttgatcaatgaaggg-ttatagacattaaagttggtcacaatgtttttagcnnnnnnngatagtacatggataa 127  Q
    |||||||| ||||||||||| |||||||||||||| | ||| ||||||| |||||||||| | ||||  |||||| |       ||||||| ||| ||||    
T  44649945 aagagttatatatgtgttgaaaaatgttgatcaattaggggcttatagaaattaaagttgattacaacatttttaac-ttttttgatagtagatgaataa 44650043  T
Q  128 ataaaagtaagatattgtggtatcttgttttataa-tttctttgaaagaaataagttgctcaa 189  Q
    ||||| || | ||  | |||||||||||||||||| ||| ||| || ||||||| ||||||||    
T  44650044 ataaaggtcaaattctatggtatcttgttttataattttttttcaatgaaataaattgctcaa 44650106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 13039066 - 13039011
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacatt 80  Q
    |||||||||||||||||||  |||||||||||||||||| |  ||||||| |||||    
T  13039066 atacaagagttacatatgttatgagaaatgttgatcaattagtggttataaacatt 13039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 70045 - 70108
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatga-agggttatagacattaaagttg 87  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  70045 atacaagaattacatatgtgttgagaaatgttgatcaattagagggttatagaaattaaagttg 70108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 12844090 - 12844028
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||| |||||    
T  12844090 atacaagagttacatatgttttgagaaatgttgatcaattaggggttatacacattatagttg 12844028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 57184 - 57121
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaa-tgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||| | |||||||||||||||| |  ||||||||||||||||||||||    
T  57184 atacaagagttacatatgtttggagaaatgttgatcaactagagggttatagacattaaagttg 57121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 14494414 - 14494468
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacat 79  Q
    |||||||| |||||||||| ||||||||||||||||||| | |||||||||||||    
T  14494414 atacaagaattacatatgttttgagaaatgttgatcaattaggggttatagacat 14494468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 17540204 - 17540155
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttata 74  Q
    ||||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  17540204 atacaagagttacatatgttttgagaaatgttgatcaattaggggttata 17540155  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 19542325 - 19542263
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||| ||| ||||||||| |||| |||| |||||||| ||| ||||||||||    
T  19542325 atacaagagttacatttgttttgagaaatattgaacaattaagggttagagatattaaagttg 19542263  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 17261776 - 17261719
Alignment:
Q  29 aagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    |||||||| | |||||| ||||||||||||||||||| |||||||  ||||||||||||    
T  17261776 aagagttaaagatgtgt-gagaaatgttgatcaatgaggggttatgtacattaaagttg 17261719  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 3420039 - 3419977
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||||||||| |||| |||||    
T  3420039 atacaagagttacatatgttttgagaaatgttgatcaattaggggttatagatattatagttg 3419977  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 2641321 - 2641251
Alignment:
Q  32 agttacatatgtgttgagaaatgttgatcaatgaagg-gttatagacattaaagttggtcacaatgttttt 101  Q
    |||| ||||||||||||||||||||||||||| | || |||||||| |||||||||| | |||||||||||    
T  2641321 agtttcatatgtgttgagaaatgttgatcaatcatggagttatagaaattaaagttgattacaatgttttt 2641251  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 31734680 - 31734644
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatca 61  Q
    ||||||||||||||||||| |||||||||||||||||    
T  31734680 atacaagagttacatatgttttgagaaatgttgatca 31734644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 40289127 - 40289183
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacatta 81  Q
    |||||||| |||||||||| |||||||||||| |||||| | ||||| |||||||||    
T  40289127 atacaagatttacatatgttttgagaaatgttaatcaattaggggttgtagacatta 40289183  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 44507869 - 44507814
Alignment:
Q  31 gagttacatatgtgttgagaaatgtt-gatcaatgaagggttatagacattaaagt 85  Q
    |||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||    
T  44507869 gagttaaatatatgttgagaaatgttagatcaatgagggattatagacattaaagt 44507814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 45612414 - 45612477
Alignment:
Q  25 atacaagagttacatatgtgtt-gagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||| || ||||||||||||| ||| | || |||||||||||| |||||    
T  45612414 atacaagagttacatatgtttttgagaaatgttgattaataagggtttatagacattatagttg 45612477  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 27063924 - 27063757
Alignment:
Q  29 aagagttacatatgtgttgagaaatgttgatcaatgaagg-gttatagacattaaagttggtcacaatgtttttagcnnnnnnngatagtacatggataa 127  Q
    ||||||||||||| |||||||||||||||||||||  ||| |||||||| ||| |||||  | ||||  ||||||||       || |||| ||| ||||    
T  27063924 aagagttacatatatgttgagaaatgttgatcaatttaggagttatagaaatttaagttaattacaacatttttagc-ttttatgacagtagatgaataa 27063826  T
Q  128 ataaaagtaagatattgtggtatcttgttttataatttctttgaaagaaataagttgctcaagttagat 196  Q
    ||||| || | ||||| ||||||||||||||| ||  | ||| ||||||||||  ||||||||||||||    
T  27063825 ataaaggtcatatattatggtatcttgttttagaacgttttttaaagaaataaactgctcaagttagat 27063757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 17715818 - 17715895
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatga-agggttatagacattaaagttggtcacaatgttttt 101  Q
    |||||||||||||||||||||||| ||||||  |||||| |  |||||||||| |||||||||| | |||||||||||    
T  17715818 atacaagagttacatatgtgttgataaatgtgtatcaattatggggttatagaaattaaagttgattacaatgttttt 17715895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 19017047 - 19017124
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatga-agggttatagacattaaagttggtcacaatgttttt 101  Q
    |||||||||||||||||||||||| ||||||  |||||| |  |||||||||| |||||||||| | |||||||||||    
T  19017047 atacaagagttacatatgtgttgataaatgtgtatcaattatggggttatagaaattaaagttgattacaatgttttt 19017124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 11410871 - 11410833
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaat 63  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  11410871 atacaagagttacatatgttttgagaaatgttgatcaat 11410833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 43921918 - 43921956
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaat 63  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  43921918 atacaagagttacatatgttttgagaaatgttgatcaat 43921956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 32883532 - 32883609
Alignment:
Q  26 tacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttggtcacaatgtttttagc 104  Q
    ||||||||||| | || ||||||| |||| ||||||||||||||||| |||||||||| ||| | ||| || |||||||    
T  32883532 tacaagagttaaa-atatgttgagcaatgatgatcaatgaagggttaaagacattaaatttgcttacattgcttttagc 32883609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 40838089 - 40838028
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagtt 86  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||| ||| |||||| ||||    
T  40838089 atacaagagttacatatgttttgagaaatgttgatcaattaggggtaataaacattatagtt 40838028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 32676610 - 32676673
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatga-agggttatagacattaaagttg 87  Q
    ||||||||||||||||||| ||||||||||||| ||||| |  ||| |||||||||||||||||    
T  32676610 atacaagagttacatatgttttgagaaatgttgttcaattagggggatatagacattaaagttg 32676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 41815598 - 41815646
Alignment:
Q  38 atatgtgttgagaaatgtt-gatcaatgaagggttatagacattaaagt 85  Q
    |||||||||||||||| || ||||||||| ||||||||||||| |||||    
T  41815598 atatgtgttgagaaatcttagatcaatgaggggttatagacatcaaagt 41815646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 11820508 - 11820563
Alignment:
Q  28 caagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaag 84  Q
    ||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||    
T  11820508 caagagttaaagatgtgt-gagaaatgttgatcaacgaagggttatagacattaaag 11820563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 37338738 - 37338800
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttg 87  Q
    ||||||||||||||||||  ||||||||||||||||||| | || || || ||||||||||||    
T  37338738 atacaagagttacatatgctttgagaaatgttgatcaattagggattttaaacattaaagttg 37338800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 48598491 - 48598420
Alignment:
Q  28 caagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaagttggtcacaatgttttt 101  Q
    ||||||||| | |||||| ||||||||||||||||||| |||| ||||| |||||||||||| |||| ||||||    
T  48598491 caagagttaaagatgtgt-gagaaatgttgatcaatga-gggtcatagatattaaagttggttacaacgttttt 48598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 6439915 - 6439873
Alignment:
Q  40 atgtgttgagaaatgttgatcaatgaagggttatagacattaa 82  Q
    |||||||||||||||||||||| ||| | ||||||||||||||    
T  6439915 atgtgttgagaaatgttgatcattgaggagttatagacattaa 6439873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 32716489 - 32716546
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacattaaa 83  Q
    ||||||||||||||||| | ||||||||| ||||| ||||| || ||||||||||||||    
T  32716489 atacaagagttacatatatattgagaaattttgat-aatgagggattatagacattaaa 32716546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 46533041 - 46532985
Alignment:
Q  25 atacaagagttacatatgtgttgagaaatgttgatcaatgaagggttatagacatta 81  Q
    ||||||||| ||||||| | ||||| ||||||||||||| | |||||||| ||||||    
T  46533041 atacaagagctacatatattttgaggaatgttgatcaattaggggttataaacatta 46532985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 13051 - 12986
Alignment:
Q  40 atgtgttgagaaatgttgatcaatgaag-ggttatagacattaaagttggtcacaatgtttttagc 104  Q
    ||||||||||||| |||||||||| | | ||||||||| |||||||||| | ||||||||||||||    
T  13051 atgtgttgagaaacgttgatcaattaggaggttatagaaattaaagttgattacaatgtttttagc 12986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 406 - 482
Alignment:
Q  120 atggataaataaaagtaagatattgtggtatcttgttttataatttctttgaaagaaataagttgctcaagttagat 196  Q
    ||||||||||||| || | ||| | | |||||||||| || ||||| ||| || ||||||| |||||||||||||||    
T  406 atggataaataaaggtcaaatactattgtatcttgttatagaattttttttaatgaaataatttgctcaagttagat 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 209355 - 209315
Alignment:
Q  46 tgagaaatgttgatcaatgaagggttatagacattaaagtt 86  Q
    ||||||||||||||||| || ||||||| ||||||||||||    
T  209355 tgagaaatgttgatcaacgaggggttatcgacattaaagtt 209315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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