View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10406_low_6 (Length: 277)
Name: NF10406_low_6
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10406_low_6 |
 | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 2530745 - 2531000
Alignment:
| Q |
19 |
gcttcaggggcaatttgtggtgttgttatttaaactacatgtgtacttgcaatgtcaaagtctgattgaactagttattcaaggttataccactccttgt |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2530745 |
gcttcagggacaatttgtggtgttgttatttaaactacatgtgtacttgcaatgtcaaagtctgattgaactagttattcaaggttataccactccttgt |
2530844 |
T |
|
| Q |
119 |
ttctctaaatttcatttttcaattcaaactt------nnnnnnnnnnnnnnntatcaattgtcacaacacttgtacatgttagtatttttcatgttttga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2530845 |
ttctctaaatttcatttttcaattcaaacttaaaaaaaaaaaaaaaaaaaaaaatcaattgtcacaacacttgtacatgttagtatttttcatgttttga |
2530944 |
T |
|
| Q |
213 |
aagcaagtatttgtgttccatttatgctatgttgtggttggtgcatcggttcatct |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2530945 |
aagcaagtatttgtgttccatttatgctatgttgtggttggtgcattggttcatct |
2531000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 39215 - 38963
Alignment:
| Q |
19 |
gcttcaggggcaatttgtggtgttgttatttaaactacatgtgtacttgcaatgtcaaagtctgattgaactagttat--tcaaggttatacca--ctcc |
114 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||| |||| |
|
|
| T |
39215 |
gcttcaggggcaatttttggtgttggtatttcaaccacatgtgtacttgaaatgccaaagtctgatggaactaattatattcaaggttataccatactcc |
39116 |
T |
|
| Q |
115 |
ttgtttctctaaatttcatttttcaattcaaacttnnnnnnnnnnnnnnnta-tcaattgtcacaacacttgtacatgttagtatttttcatgttttgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
39115 |
ttgtttctctaaatttcatttttctattcaaacttaaaaaaaataaaaataaatcaattgtcacaactcttt--catgttagtatttttcatgttttgaa |
39018 |
T |
|
| Q |
214 |
agcaagtatttgtgttccatttatgctatgttgtggttggtgcatcggttcatct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39017 |
agcaagtatttgtgttccatttatgctatgttgtggttggtgcatcggttcatct |
38963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 67 - 268
Target Start/End: Original strand, 9470030 - 9470224
Alignment:
| Q |
67 |
gcaatgtcaaagtctgattgaactagttattcaaggttatacc-actccttgtttctctaaatttcatttttcaattcaaacttnnnnnnnnnnnnnnnt |
165 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9470030 |
gcaatgccaacgtctgattgaactagttattcaaggttatatcgactccttgtttctctaaatttcatttttctattcaaacttaaaaaaga-------- |
9470121 |
T |
|
| Q |
166 |
atcaattgtcacaacacttgtacatgttagtatttttcatgttttgaaagcaagtatttgtgttccatttatgctatgttgtggttggtgcatcggttca |
265 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
9470122 |
atcaattgtcacaacacttgttcatgttagtctttttcattttttgaaagcaagtgtttgtgttccatttatgatatgttgtggttggtgcattggttca |
9470221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 31003535 - 31003342
Alignment:
| Q |
60 |
tgtacttgcaatgtcaaagtctgattgaactagttattcaaggttatacc--actccttgtttctctaaatttcatttttcaattcaaacttnnnnnnnn |
157 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
31003535 |
tgtacttgcaatgccaaagtctgattgaactagttattcaagattatattgtaatccctgtttctctaaatttcatttttctattcaaacttaaagaaga |
31003436 |
T |
|
| Q |
158 |
nnnnnnntatcaattgtcacaacacttgtacatgttagtatttttcatgttttgaaagcaagtatttgtgttccatttatgctatgttgtggttggtgca |
257 |
Q |
| |
|
|| | ||||||||||| |||| ||| |||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||||||| || |
|
|
| T |
31003435 |
--------ataagttgtcacaacatttgttcatattagtatttt-catgttttgatagcaagtatttctgttccgattatgctatgttgtggttggtaca |
31003345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 31001910 - 31001819
Alignment:
| Q |
60 |
tgtacttgcaatgtcaaagtctgattgaactagttattcaaggttatacc--actccttgtttctctaaatttcatttttcaattcaaactt |
149 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31001910 |
tgtacttgcaatgccaaagtccgattgaactagttattcaaggttatatcgtaatccttgtttctctaaatttcatttttctattcaaactt |
31001819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University