View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10406_low_8 (Length: 222)
Name: NF10406_low_8
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10406_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 17609596 - 17609468
Alignment:
| Q |
24 |
taactaagatacatgacaagaaaaaatatatattagactaaaatatatatttaatacacac--atgcgcgcactcacacattaaacctttattctaaatt |
121 |
Q |
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| T |
17609596 |
taactaagatacttgacagaaaaaaaaaaatataaaacttaaatatatatttaatacacacgcacacgcgcgctcacacattaaacctttattctaaatt |
17609497 |
T |
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| Q |
122 |
ttatggattgatcctgatttgtggtgcac |
150 |
Q |
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|||| |||| |||||| |||||||||||| |
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| T |
17609496 |
ttatagattcatcctggtttgtggtgcac |
17609468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 17609424 - 17609392
Alignment:
| Q |
173 |
ccattgttgttgttggtgtagctatattgttgt |
205 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17609424 |
ccattgttgttgttggtgtagctatattgttgt |
17609392 |
T |
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