View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10406_low_9 (Length: 216)
Name: NF10406_low_9
Description: NF10406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10406_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 9587601 - 9587785
Alignment:
| Q |
19 |
agaaatgtatttccttttcccggatatttcaaagg-gggaaagtattgaatctcctaatggaagggttccacaaaagagggaaatgatcctcaatggtga |
117 |
Q |
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| T |
9587601 |
agaaatgtatttccttttcccggatatttcaaaggagggaaagtattgaatctcctaatggaagggttccacaaaagagggaaatgatcctcaatggtga |
9587700 |
T |
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| Q |
118 |
aacaaaggatgccgttgcaagagcaaacacgcaaatcacaaacgttaacattgttcaaaaaatcaggacaatcgagttgggtctg |
202 |
Q |
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| T |
9587701 |
aacaaaggatgccgttgcaagagcaaacacgcaaatcacaaacgttaacattgttcaaaaaatcaggacaatcgagttgggtctg |
9587785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 764014 - 764046
Alignment:
| Q |
61 |
tattgaatctcctaatggaagggttccacaaaa |
93 |
Q |
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| T |
764014 |
tattgaatctcctaatggaagggttccacaaaa |
764046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 9585588 - 9585620
Alignment:
| Q |
61 |
tattgaatctcctaatggaagggttccacaaaa |
93 |
Q |
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| T |
9585588 |
tattgaatctcctgatggaagggttccacaaaa |
9585620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 24417977 - 24418008
Alignment:
| Q |
111 |
atggtgaaacaaaggatgccgttgcaagagca |
142 |
Q |
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| T |
24417977 |
atggtgaaacaaaggatgccgttgcaagagca |
24418008 |
T |
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