View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10407_high_1 (Length: 396)
Name: NF10407_high_1
Description: NF10407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10407_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 10506772 - 10507147
Alignment:
| Q |
11 |
gaagcatagggcgagacaagcggcggagactaatcttttgaggatgaaaaaggaggctattcaagctttgcctgggggtttgaaggaagctgctttggtg |
110 |
Q |
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| T |
10506772 |
gaagcatagggcgagacaagcggcggagactaatcttttgatgatgaaaaaggaggctattgaagctttgcctgggggtttgaaggaagctgctttggtg |
10506871 |
T |
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| Q |
111 |
ccggatttgactccatttccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatca |
210 |
Q |
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| T |
10506872 |
ccggatttgactccatttccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatca |
10506971 |
T |
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| Q |
211 |
gtgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaatcctgcaaataagatgg |
310 |
Q |
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| T |
10506972 |
gtgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaatcctgcaaataagatgg |
10507071 |
T |
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| Q |
311 |
agtcaaactgtctttaattgatgaaatatcattgaatatgtttgcttatatcattggagttttcgtaacacctatg |
386 |
Q |
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| T |
10507072 |
agtgaaactgtctttaattgatgaaatatcattggatatgtttgcttatatcattggagttttcgtaacacctatg |
10507147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 8755764 - 8755480
Alignment:
| Q |
11 |
gaagcatagggcgagacaagcggcggagactaatcttttgaggatgaaaaaggaggctattcaagctttgcctgggggtttgaaggaagctgctttggtg |
110 |
Q |
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| T |
8755764 |
gaagcatagggcgagacaagcggcagagacaaatcttttgaggatgaaaaagaaggctattgaagctttgcctgggggtttgaaggaaactgctttggtg |
8755665 |
T |
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| Q |
111 |
ccggatttgactccatttccggtgaataggtttatggcgacgcttacaccgcctattgatgggtatattgagaagattaaggaggctgctgataggatca |
210 |
Q |
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| T |
8755664 |
ccggatttgacgccgtttccgatgaatatgtttatggcaacgcttacgccgcctattgatgggtatattgaggagattaaggaggctgctgataggatca |
8755565 |
T |
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| Q |
211 |
gtgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaatc |
295 |
Q |
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| T |
8755564 |
gtgggaaggagaagattaggtagattggtagtgttgattttcagggtccgtcacaggttagtgttgattttgtttgtattgaatc |
8755480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 10509890 - 10509972
Alignment:
| Q |
212 |
tgggaaggagaagattaggtagattggtagtgttgattttgatggttcgtcacaggttagtattgattttgtttgtattgaat |
294 |
Q |
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| T |
10509890 |
tgggaaggagaagattaggtagattggtagtgttgattttgagggtttgtcacaggttagtgttgattttgtttgtattgaat |
10509972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 363
Target Start/End: Complemental strand, 8755454 - 8755373
Alignment:
| Q |
280 |
ttgtttgtattgaatcctgcaaataagatggagtcaaactgtctttaattgatgaaatatcattgaatatgtttgcttatatca |
363 |
Q |
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| T |
8755454 |
ttgtttgtattgaatcttggaaataacatggagtgaaactg--tttaatcgatgaaatttcattggatatgtttgtttatatca |
8755373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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