View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10407_low_1 (Length: 519)

Name: NF10407_low_1
Description: NF10407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10407_low_1
NF10407_low_1
[»] chr4 (7 HSPs)
chr4 (134-485)||(45858795-45859142)
chr4 (132-480)||(45876731-45877069)
chr4 (336-467)||(56208539-56208670)
chr4 (330-474)||(47293456-47293600)
chr4 (330-468)||(55705881-55706019)
chr4 (355-463)||(54304249-54304357)
chr4 (142-224)||(56208678-56208760)
[»] chr5 (3 HSPs)
chr5 (330-475)||(35854542-35854687)
chr5 (330-406)||(35802504-35802580)
chr5 (332-463)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (325-466)||(24357450-24357591)
chr2 (135-242)||(24357269-24357376)
[»] chr8 (2 HSPs)
chr8 (329-468)||(7972083-7972222)
chr8 (330-463)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 134 - 485
Target Start/End: Complemental strand, 45859142 - 45858795
Alignment:
Q  134 caggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttt 233  Q
    ||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||||| || ||  || | |||||||||||||||    
T  45859142 caggccacatgaagcaaagctatttgccaagagaacacagaatgcttataaacaatttcgagacaaagctgccctttcccgagctatgactgtatgtttt 45859043  T
Q  234 aaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggtaga 333  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||||    |||||||||||| ||||||||| ||||||||||||||    
T  45859042 aaatttatttaagaaaaatctattttccatgctttatgttcttcctccttgtatatcca----atagttacttaccgctactgtcctgtcactaggtaga 45858947  T
Q  334 caagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgct 433  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  45858946 caagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctattgct 45858847  T
Q  434 atagccaaactgaaggccgatatacctcaagacagtcaggttgatttaagaa 485  Q
    ||||||||| |||||||| ||||||||||||| | |||||||||||| ||||    
T  45858846 atagccaaattgaaggccaatatacctcaagataatcaggttgatttcagaa 45858795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 132 - 480
Target Start/End: Complemental strand, 45877069 - 45876731
Alignment:
Q  132 tgcaggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtt 231  Q
    ||||||||||||||||||| |||||||||||||    || | ||| |||||||||||||||| || || || ||| | || |||||||||||||||||||    
T  45877069 tgcaggccacatgaagcagagctatttgccaagtctgcacagaatttttataaacaatttcgtgataaggcggctttttccagatcaatgactgtatgtt 45876970  T
Q  232 ttaaatttatttaagaaaaatctattttccatgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggta 331  Q
    ||||||| ||  |||||||| ||||||||  ||||||||||||||||  ||  ||| ||||    ||||||||    ||||||| ||  ||| |||||||    
T  45876969 ttaaattcatacaagaaaaagctattttc--tgttttctgttcttcccccttctatgtcca----atagttac----agctactatcccgtcgctaggta 45876880  T
Q  332 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 431  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  45876879 gacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctattg 45876780  T
Q  432 ctatagccaaactgaaggccgatatacctcaagacagtcaggttgattt 480  Q
    ||||||| ||| |||| ||  |||||||||||||||| |||||||||||    
T  45876779 ctatagcaaaattgaaagctaatatacctcaagacagacaggttgattt 45876731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 336 - 467
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
Q  336 agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat 435  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  436 agccaaactgaaggccgatatacctcaagaca 467  Q
    ||| ||| ||||||| | ||||||||||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagaca 56208539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 330 - 474
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
Q  330 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 429  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||| || |||||    
T  47293456 tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 47293555  T
Q  430 tgctatagccaaactgaaggccgatatacctcaagacagtcaggt 474  Q
    ||||||||| ||| |||||||| ||||||||||| |||| |||||    
T  47293556 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 47293600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 330 - 468
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
Q  330 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 429  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  55705881 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 55705980  T
Q  430 tgctatagccaaactgaaggccgatatacctcaagacag 468  Q
    ||||||  | ||| |||| ||  ||||||||||| ||||    
T  55705981 tgctattacaaaattgaaagctaatatacctcaaaacag 55706019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 463
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
Q  355 ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat 454  Q
    ||||| ||||||||| |||||||| |||  |||||  |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| ||    
T  54304249 ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat 54304348  T
Q  455 atacctcaa 463  Q
    |||||||||    
T  54304349 atacctcaa 54304357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 56208760 - 56208678
Alignment:
Q  142 atgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgact 224  Q
    ||||||||| ||||||||| |||||| || || || ||||||||||||||||||| || || ||||| || ||||||||||||    
T  56208760 atgaagcagagctatttgctaagagagcacaacatatttataaacaatttcgagataatgcggctctttccagatcaatgact 56208678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 330 - 475
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
Q  330 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 429  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  430 tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt 475  Q
    ||||||||| ||| |||||||| ||||||||||| |||| ||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt 35854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 406
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  330 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct 406  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 332 - 463
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
Q  332 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 431  Q
    ||||||||| || || || ||||  ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  432 ctatagccaaactgaaggccgatatacctcaa 463  Q
    |||| || ||| | |||||| |||||||||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaa 10521434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 325 - 466
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
Q  325 ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt 424  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  | || ||     
T  24357450 ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga 24357549  T
Q  425 gctattgctatagccaaactgaaggccgatatacctcaagac 466  Q
    |||||||| ||||| ||| |||||||| ||||||||||||||    
T  24357550 gctattgccatagcaaaattgaaggccaatatacctcaagac 24357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 24357269 - 24357376
Alignment:
Q  135 aggccacatgaagcagtgctatttgccaagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgtttta 234  Q
    |||||| ||||||||| ||||||||||||     || | ||||  |||||||||||||||||||| || ||| | || ||||| ||||||||||||| ||    
T  24357269 aggccagatgaagcagagctatttgccaaatctgcacagaatgcatataaacaatttcgagacaaggcagctttatccagatctatgactgtatgttcta 24357368  T
Q  235 aatttatt 242  Q
    ||||||||    
T  24357369 aatttatt 24357376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 329 - 468
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
Q  329 gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta 428  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||||||  ||||  |||| |||||||    
T  7972222 gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta 7972123  T
Q  429 ttgctatagccaaactgaaggccgatatacctcaagacag 468  Q
    |||||||||| ||| |||||||| || | |||||| ||||    
T  7972122 ttgctatagcaaaattgaaggccaatcttcctcaaaacag 7972083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 330 - 463
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
Q  330 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 429  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||| |||||| ||||| ||| |||||| ||||||||||||||  |||| |  |||||    
T  7961851 tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat 7961752  T
Q  430 tgctatagccaaactgaaggccgatatacctcaa 463  Q
    ||||||||| ||| |||||||| |||| ||||||    
T  7961751 tgctatagcaaaattgaaggccaatattcctcaa 7961718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University