View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_high_4 (Length: 333)
Name: NF10408_high_4
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 34228493 - 34228172
Alignment:
| Q |
1 |
ccaagagacttatcctgatgcatttgaaataaatcttgcttaagccctttctttgtaataggtatcagactctggttatattccaaagtaactctactat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228493 |
ccaagagacttatcctgatgcatttgaaataaatcttgcttaagccctttctttgtaataggtatcagactctggttatattccaaagtaactctactat |
34228394 |
T |
|
| Q |
101 |
gaatgagttccaagacaggtttgtggacaccatcattaggcctgaacaactcatcaaaatatttcttagctacatcacacaactcctcttggctagtaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34228393 |
gaatgagttccaagacaggtttgtggacaccatcattaggcctgaacaactcatcaaaatatttcttggctacatcacacaactcctcttggctagtaac |
34228294 |
T |
|
| Q |
201 |
ctcctcgcgtcaatcgttaaccaatttagttaccttcttcttcttgatcctcgtcattgctgacatatgaaaatatttagtattcaagtcaccctcctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34228293 |
ctcctcgcgtcaatcgttaaccaatttagttaccttcttcttcttgatcctcatcattgttgacatatgaaaatatttagtattcaagtcaccctcctga |
34228194 |
T |
|
| Q |
301 |
tccggtgcgttttagctctctg |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34228193 |
tccggtgcgttttagctctctg |
34228172 |
T |
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