View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_high_5 (Length: 317)
Name: NF10408_high_5
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 5312574 - 5312861
Alignment:
| Q |
19 |
tcaacgacattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatg |
118 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5312574 |
tcaacgacattggtttttt--ctcaaggaggtcaggaatgaaaatgagatcagctttgatggtggcagtttatcgaaagcagctaaagctttcaagcatg |
5312671 |
T |
|
| Q |
119 |
gcaaggacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggactt |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5312672 |
gcaaggacaagacactcaaccggcgaaattttgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggactt |
5312771 |
T |
|
| Q |
219 |
gtgcattgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5312772 |
gtgcattgcaacttgttctgtccattgctattctttttggtgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
5312861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 24 - 300
Target Start/End: Original strand, 5305367 - 5305643
Alignment:
| Q |
24 |
gacattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaag |
123 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| ||| |||||| |
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| T |
5305367 |
gacattggtttttcaactcaaggaggtcaggaatgaaaatgagatcagctttgatggcagcagtttatcaaaagcagctaaagctttctagcccggcaag |
5305466 |
T |
|
| Q |
124 |
gacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgca |
223 |
Q |
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|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5305467 |
aacaagacacttggccggcgaaattgtgaattacattgtagttgatgcatatagaatgggagaattcccatggtggtttcatataacatggacttgtgca |
5305566 |
T |
|
| Q |
224 |
ttgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
300 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||| |||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
5305567 |
ttgcaacttgttctttccattgttatcctttttggtgttgtaggtattggtgctcttcctggtttagtccctcttct |
5305643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 15124611 - 15124892
Alignment:
| Q |
19 |
tcaacgacattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatg |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||||| |||||||||| |||||||||||||||||| ||| | |
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| T |
15124611 |
tcaaagacattggttttttaactcaaggaggtcaggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttctagctcg |
15124710 |
T |
|
| Q |
119 |
gcaaggacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggactt |
218 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15124711 |
gcaaggaaaagacactcggtcggagaaattgtgaattacattgcagttgattcttatagaatgggagaatttccatggtggtttcatataacatggactt |
15124810 |
T |
|
| Q |
219 |
gtgcattgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
300 |
Q |
| |
|
||||||||||||| |||| |||| | |||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15124811 |
ctgcattgcaactttttctttccaccagtgttctctttattgttgttggtattggtgctcttcctggtttagtgcctcttct |
15124892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 5284241 - 5283960
Alignment:
| Q |
19 |
tcaacgacattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatg |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||| |||||| |||||| ||||||||||| ||| | |
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| T |
5284241 |
tcaaagacattggttttttaactcaaggaggtcaggaatgaaaatgagatcagctcttatggtggcaatttatcaaaagcaactaaagctttctagctcg |
5284142 |
T |
|
| Q |
119 |
gcaaggacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggactt |
218 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
5284141 |
gcaaggacaagacactcggccggtgaaattgtgaattacattgtagttgatgcatatagaatgggagaatttccatggtggtttcatatggcatgggctt |
5284042 |
T |
|
| Q |
219 |
gtgcattgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
300 |
Q |
| |
|
|||| | ||| ||||| |||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
5284041 |
ctgcacttcaaattgttttgtctatttttattctttttggtgttgtaggtattggtgctcttccaggtttagtccctcttct |
5283960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 14951056 - 14950774
Alignment:
| Q |
19 |
tcaacgacattggttttttaactcaag-gaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcat |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| | | ||||| |||||||||| |||||||||||||||||||||| |
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| T |
14951056 |
tcaaagacattggttttttaactcaaaagaggtcaggtatgaaaatgagatcagctctaatggtagcagtttatcaaaagcagctaaagctttcaagctc |
14950957 |
T |
|
| Q |
118 |
ggcaaggacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggact |
217 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14950956 |
ggcaaggatgaggcactcggccggagaaattgtgaattacattgcagttgatgcttatagaatgggagaatttccatggtggtttcatatggcatggact |
14950857 |
T |
|
| Q |
218 |
tgtgcattgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
300 |
Q |
| |
|
| || ||||||||||||||| || |||| | | |||||| ||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
14950856 |
tctgtattgcaacttgttctttctattggtgtccttttttttgttgttggtattggtgctcttcctggtttagtccctcttct |
14950774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 300
Target Start/End: Complemental strand, 5291729 - 5291455
Alignment:
| Q |
26 |
cattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaagga |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||| ||||| ||||||||| |||||||||| ||| ||||||| |
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| T |
5291729 |
cattggttttttaactcaaggaggtcaggaatgaaaatgagatcagctcttatggtggcggtttaccgaaagcagttaaagctttctagctcggcaaggc |
5291630 |
T |
|
| Q |
126 |
caagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcatt |
225 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5291629 |
agagacactcggccggtgaaattgtgaattacattgcagttgatgcatacagaatgggagaatttccatggtggtttcatacaacatggacttgtgcatt |
5291530 |
T |
|
| Q |
226 |
gcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
300 |
Q |
| |
|
|||||| |||| |||||| | | || |||| |||||| ||| ||||||||||||| |||||||| |||||||| |
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|
| T |
5291529 |
tcaacttattctttccattagtgtcctctttggtgttgtcggtgttggtgctcttcctggtttagtccctcttct |
5291455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 31527733 - 31527459
Alignment:
| Q |
24 |
gacattggttttttaactcaaggaggtcaggaatgaaaatgatatcagttttgatggtggcagtttatcgaaagcagctaaagctttcaagcatggcaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| ||| || || |
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|
| T |
31527733 |
gacattggttttttaactcaaggaggttaggaatgaaaatgagatcagctctgatggtggcagtttatgagaagcagctaaagctttctagctcgggaaa |
31527634 |
T |
|
| Q |
124 |
gacaagacactcaaccggcgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgca |
223 |
Q |
| |
|
|| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31527633 |
gataagacactcggccggtgaaattgtgaattacattgcagttgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtata |
31527534 |
T |
|
| Q |
224 |
ttgcaacttgttctgtccattgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctctt |
298 |
Q |
| |
|
| ||||||||||||||||||||| | ||||| | |||||||||||||||||||||||| |||||||| |||||| |
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| T |
31527533 |
ctacaacttgttctgtccattgctgtccttttcggtgttgttggtattggtgctcttcctggtttagtccctctt |
31527459 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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