View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_10 (Length: 317)
Name: NF10408_low_10
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 40464686 - 40464985
Alignment:
| Q |
1 |
tagtatataccaaattatcactgaaacaatagtaaagttataaacagcttttgcgcgtgtgagtgagagagtgatatgagtagggtcttccaaaaatgca |
100 |
Q |
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| T |
40464686 |
tagtatataacaaattatcactgaaacaatagtaaagttataaacagcttttgcgcgtgtgagggagagagtgatatgagtagggtcttccaaaaatgca |
40464785 |
T |
|
| Q |
101 |
tttgtatcagcagggaaagatgtaatgatgagnnnnnnnngaaggtagtggactcaataaataaatgtaactaaaataaattgtcgcacacaaactaaac |
200 |
Q |
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| T |
40464786 |
tttgtatcagcagggaaagatgtaatgatgag-tttttttgaaggtagtggactcaataattaaatgtaactaaaataaattgtcgcacacaaactagac |
40464884 |
T |
|
| Q |
201 |
ttaacaatgtagtaaatgaatgtttgaatctcgaatnnnnnnnntcgacagttaatgatgtatgacatatttcgaataaaagtatctttagtggagctta |
300 |
Q |
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|| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
40464885 |
ttcacaatgtaacaaatgaatgtttgaatctcgaataaaaaaaatcgacagttaattatgtatgacatatttcgaataaaattatctttagtggagttta |
40464984 |
T |
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