View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_13 (Length: 258)
Name: NF10408_low_13
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 24420086 - 24420298
Alignment:
| Q |
24 |
aaaaacaactaaaggagataaataaatacaaacttatgaattaacaccatgcatgcacagatgcatttgaatcaaaataaggctcttaattcactgtaaa |
123 |
Q |
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| T |
24420086 |
aaaaacaactaaaggagaaaaataaatacaaacttatgaattaacaccatgcatgcacagatgcatttgaatcaaaataaggctcttaattcactgtaaa |
24420185 |
T |
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| Q |
124 |
gcatagacttttttattaacaaaagcttgaatacaaattaaccacaacaatgctgaatataattcattgannnnnnnnacaaataatagccggaagctta |
223 |
Q |
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| T |
24420186 |
gcatagacttttttattaacaaaagattgaatacaaattaaccacaacaatgctgaatataattcattgaaatttttt-caaataatagccggaagctta |
24420284 |
T |
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| Q |
224 |
atagatgggaggcg |
237 |
Q |
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|||||||||||||| |
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| T |
24420285 |
atagatgggaggcg |
24420298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 24471502 - 24471408
Alignment:
| Q |
24 |
aaaaacaactaaaggagataaataaatacaaacttatgaattaacaccatgcatgcacagatgcatttgaatcaaaataaggctcttaattcact |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24471502 |
aaaaacaactaaaggagataaataaacacaaacttatgaattaacaccatacatgcacagatgcatttgaatcaaaataaggctattaattcact |
24471408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 24475730 - 24475895
Alignment:
| Q |
32 |
ctaaaggagataaataaatacaaacttatgaattaacaccatgcatgcacagatgcatttgaatcaaaataa---ggctcttaattcactgtaaagcata |
128 |
Q |
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| T |
24475730 |
ctaaaggagattgataaatactgacttatgaattaacaccatacatgcacaattgcacttgaaccgaaataattaggctcttaattcattgtagtgtata |
24475829 |
T |
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| Q |
129 |
gactt-ttttattaacaaaagcttgaatacaaattaaccacaacaatgctgaatataattcattga |
193 |
Q |
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| || ||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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| T |
24475830 |
aaattcttttattcacaaaagcttcgatacaaattaaccagaacaatgctgaatataattctttga |
24475895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 24471402 - 24471322
Alignment:
| Q |
156 |
acaaattaaccacaacaatgctgaatataattcattgannnnnnnnacaaataatagccggaagcttaatagatgggaggcg |
237 |
Q |
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| T |
24471402 |
acaaattaaccacaacaatgctgaatataattcattgaaaaaattt-caaatgatagccggaagcttaatagatgggaggcg |
24471322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 24406228 - 24406279
Alignment:
| Q |
142 |
acaaaagcttgaatacaaattaaccacaacaatgctgaatataattcattga |
193 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
24406228 |
acaaaagcttaaatacaaattaaccacaacaatgttgaacataattcattga |
24406279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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