View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10408_low_15 (Length: 253)

Name: NF10408_low_15
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10408_low_15
NF10408_low_15
[»] chr2 (24 HSPs)
chr2 (15-253)||(9320708-9320948)
chr2 (15-253)||(9328327-9328565)
chr2 (51-231)||(12012750-12012928)
chr2 (63-231)||(9284388-9284556)
chr2 (15-230)||(9061358-9061573)
chr2 (51-231)||(11987685-11987866)
chr2 (78-230)||(8573725-8573877)
chr2 (78-230)||(9291713-9291865)
chr2 (63-231)||(9315795-9315963)
chr2 (64-222)||(9274277-9274435)
chr2 (78-230)||(10347552-10347707)
chr2 (51-231)||(12006316-12006497)
chr2 (63-253)||(10352885-10353075)
chr2 (51-227)||(12019090-12019267)
chr2 (80-231)||(10335649-10335800)
chr2 (78-253)||(10341140-10341315)
chr2 (78-230)||(10371625-10371780)
chr2 (63-153)||(7115945-7116035)
chr2 (78-253)||(9065790-9065962)
chr2 (63-149)||(9294920-9295006)
chr2 (173-231)||(16268954-16269012)
chr2 (168-230)||(7115844-7115906)
chr2 (111-231)||(8579703-8579823)
chr2 (109-231)||(9364450-9364572)
[»] scaffold0667 (1 HSPs)
scaffold0667 (21-231)||(4188-4394)
[»] chr8 (1 HSPs)
chr8 (101-226)||(41966911-41967036)
[»] chr3 (1 HSPs)
chr3 (56-229)||(37462234-37462410)
[»] chr1 (4 HSPs)
chr1 (120-233)||(29453500-29453613)
chr1 (119-233)||(29467976-29468090)
chr1 (119-233)||(29423097-29423211)
chr1 (173-233)||(29443517-29443577)
[»] chr4 (1 HSPs)
chr4 (129-253)||(26574700-26574824)
[»] chr7 (3 HSPs)
chr7 (135-230)||(45230256-45230351)
chr7 (148-230)||(45243531-45243613)
chr7 (121-230)||(45237760-45237869)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 9320708 - 9320948
Alignment:
Q  15 gacatcaacttatacatagcaaaaactcaaaaaactc--ataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaatt 112  Q
    |||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320708 gacatcaactaatacatagcaaaaactcaaaaaactagtataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaatt 9320807  T
Q  113 atcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9320808 atcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaa 9320907  T
Q  213 tcataccaaaacagcttctcaacatctaccctcaacaaaac 253  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  9320908 tcataccaaaacagcttctcagcatctaccctcaacaaaac 9320948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 9328327 - 9328565
Alignment:
Q  15 gacatcaacttatacatagcaaaaactcaaaaaactcataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  9328327 gacatcaacttatacatagcaaaaactcaaaaaactcataatcaaaagaagtaccttctcttgctcttgcttgtacgattctccttcttcctagaattat 9328426  T
Q  115 caacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatc 214  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  9328427 caacagggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatc 9328526  T
Q  215 ataccaaaacagcttctcaacatctaccctcaacaaaac 253  Q
    |||| ||||||||||||||| ||| ||||||||||||||    
T  9328527 atacaaaaacagcttctcaaaatccaccctcaacaaaac 9328565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 12012928 - 12012750
Alignment:
Q  51 cataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 149  Q
    ||||||||| || |||||||||||| |||||||||||| | ||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  12012928 cataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaaca 12012829  T
Q  150 caaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    |||| |||| || ||| ||||| |||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||    
T  12012828 caaatcatagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagcttct 12012750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 63 - 231
Target Start/End: Complemental strand, 9284556 - 9284388
Alignment:
Q  63 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactc 162  Q
    |||||||||||| |||||||||||  |||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||     
T  9284556 aagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactttcaacacaaatcatagctt 9284457  T
Q  163 catggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    |||  |||| ||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||    
T  9284456 catccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttct 9284388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 9061573 - 9061358
Alignment:
Q  15 gacatcaacttatacatagcaaaaactcaaaaaa---ctcataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaat 111  Q
    ||||||||||||||||||||||||||||||||||   ||||||     || |||||||||||| || |||||||||||||||||||||||||   | ||     
T  9061573 gacatcaacttatacatagcaaaaactcaaaaaaaaactcatataatcaataagtaccttctcttggtcttgcttgtacgattctccttctt---acaag 9061477  T
Q  112 tatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaa 211  Q
    |||||||||||||| ||||||  || |||||||||||| |||||||| || |||  |||| |||||||||||||||||||||||||||| ||||||| |     
T  9061476 tatcaacagggaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattccttcaacataactaacttgttcactcttgag 9061377  T
Q  212 atcataccaaaacagcttc 230  Q
    |||||||||||||||||||    
T  9061376 atcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 11987866 - 11987685
Alignment:
Q  51 cataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 149  Q
    ||||||||| || |||||||||||| || ||||||||| | ||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  11987866 cataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaaca 11987767  T
Q  150 caaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    |||| |||| || ||| ||| | ||||||||| ||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  11987766 caaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttct 11987685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 8573877 - 8573725
Alignment:
Q  78 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaa 177  Q
    ||||||||||||| |||||||| |||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||   ||| |||||    
T  8573877 ctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaa 8573778  T
Q  178 ttccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  8573777 ttccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttc 8573725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 9291713 - 9291865
Alignment:
Q  78 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaa 177  Q
    |||||| | ||| |||||||||||||| || ||||||||||||||||||||||||| | ||||||| ||||||||| |||| || |||  |||| |||||    
T  9291713 ctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaa 9291812  T
Q  178 ttccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  9291813 ttccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 9291865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 9315795 - 9315963
Alignment:
Q  63 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactc 162  Q
    |||||||||||| || ||||||||||| |||||||||||||| || ||| ||||||||||||||||||||| ||||||||| ||||||||| |||| ||     
T  9315795 aagtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagctt 9315894  T
Q  163 catggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    |||  |||| || |||||||||||||||| |||||||| ||||| |||| ||| |||||||||||||||    
T  9315895 catccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttct 9315963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 9274277 - 9274435
Alignment:
Q  64 agtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactcc 163  Q
    |||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||| ||||  |||  |||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttcc 9274376  T
Q  164 atggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaa 222  Q
    || ||| | ||||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  9274377 attgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaa 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 10347552 - 10347707
Alignment:
Q  78 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaat---cag 174  Q
    |||||||||| | |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||  | |||  | ||    ||    
T  10347552 ctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggag 10347651  T
Q  175 gaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  10347652 gaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttc 10347707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 12006497 - 12006316
Alignment:
Q  51 cataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 149  Q
    ||||||||| || |||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||||  | |||||||||||||||    
T  12006497 cataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaaca 12006398  T
Q  150 caaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    |||| |||  || ||| |||||  |||||||| ||||  ||| |||||| | ||||||||||||||||||||| ||||||||    
T  12006397 caaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttct 12006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 10352885 - 10353075
Alignment:
Q  63 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactc 162  Q
    ||||||||| ||  ||||| ||||||| ||||||||| |||| ||  |||||||||||||||| ||||||| ||||||||||||||||||| ||||        
T  10352885 aagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatcatagtgt 10352984  T
Q  163 catggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcaacatctaccctcaacaaaac 253  Q
    |||  |||| | ||||| ||| ||||||||||||||||  ||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  10352985 catccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaatagattctcaacatctaccctcaacaaaac 10353075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 12019267 - 12019090
Alignment:
Q  51 cataatcaa-aacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 149  Q
    ||||||||| || |||||||||||| ||||||| |||||||||||||||||| | | |  || |||| |||| ||||||||||| |||||||||||||||    
T  12019267 cataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaaca 12019168  T
Q  150 caaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagc 227  Q
    |||| |||  || ||| ||||| |||||||||||||||||||||||||||   |||||||||||||||||||| ||||    
T  12019167 caaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccagc 12019090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 10335649 - 10335800
Alignment:
Q  80 cttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaatt 179  Q
    ||||||||||||||||| ||||||| ||  |||||||||||| ||||||||||  ||||||||||||||||||| ||||    |||  |||| |||||||    
T  10335649 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaatt 10335748  T
Q  180 ccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  10335749 ccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttct 10335800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 253
Target Start/End: Original strand, 10341140 - 10341315
Alignment:
Q  78 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaa 177  Q
    |||||||||| | |||||||||||||| ||  ||| |||||||||||| ||||||| || | |||||||||||| | |||| |  |||  ||||||||||    
T  10341140 ctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaa 10341239  T
Q  178 ttccttcaac---ataactaacttgtgcactcttcaaatcataccaaaacagcttctcaacatctaccctcaacaaaac 253  Q
    ||||||||||   ||||||||||||| |||||| ||||||||||||||||||   ||||||||||||||||||||||||    
T  10341240 ttccttcaacataataactaacttgttcactctccaaatcataccaaaacag---ctcaacatctaccctcaacaaaac 10341315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 10371625 - 10371780
Alignment:
Q  78 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaa---ggaaggtgggacaagacttccaacacaaaacataactccatggaaatcag 174  Q
    |||||||||||| |||||||||||||| ||  |||||||||| || |   ||  ||||| |||||||| |||||||||| |||| |  |||  |||| ||    
T  10371625 ctcttgcttgtatgattctccttcttcctaccattatcaacaaggtaagggggtggtggtacaagactaccaacacaaaccatagcatcatccaaattag 10371724  T
Q  175 gaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
     | ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10371725 aatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttc 10371780  T

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Target: chr2; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 7116035 - 7115945
Alignment:
Q  63 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaa 153  Q
    |||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| ||| ||| |||||    
T  7116035 aagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaa 7115945  T

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Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 9065962 - 9065790
Alignment:
Q  78 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaa 177  Q
    |||||| |||| |||||||||||| |   | ||||||||||||||||||||| ||| ||||||||| ||||||||| || |    |||   ||| |||||    
T  9065962 ctcttggttgttcgattctccttcct---acaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaa 9065866  T
Q  178 ttccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcaacatctaccctcaacaaaac 253  Q
     ||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |  |||||||  |||||||||    
T  9065865 ctccttcaacataaataacttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaac 9065790  T

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Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 9295006 - 9294920
Alignment:
Q  63 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaaca 149  Q
    |||||||||||| |||||||||||  |||||||||||||||  |||||||||||||||||||||||||||  || |||||| |||||    
T  9295006 aagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgagactttcaaca 9294920  T

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Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 16268954 - 16269012
Alignment:
Q  173 aggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 231  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||    
T  16268954 aggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttct 16269012  T

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Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 7115906 - 7115844
Alignment:
Q  168 aaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
    |||| |||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||||    
T  7115906 aaattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttc 7115844  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 8579823 - 8579703
Alignment:
Q  111 ttatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttca 210  Q
    ||||||| ||| ||||||||||| | |||  |||||||| ||| ||||  | ||| ||||| ||||||||||| |||| || |||||| | |||| || |    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  211 aatcataccaaaacagcttct 231  Q
     ||||||||||||||||||||    
T  8579723 gatcataccaaaacagcttct 8579703  T

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Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 9364450 - 9364572
Alignment:
Q  109 aattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactctt 208  Q
    ||||||||||||| || |||||||| |||||||| |||||||||| |||| || |||  | || ||||||||||  ||||  | |||| | | |||||||    
T  9364450 aattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactctt 9364549  T
Q  209 caaatcataccaaaacagcttct 231  Q
     | ||| ||||||||||||||||    
T  9364550 gagatcgtaccaaaacagcttct 9364572  T

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Target: scaffold0667 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 4188 - 4394
Alignment:
Q  21 aacttatacatagcaaaaactcaaaaaactc-ataatcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaaca 119  Q
    |||||||||| |||||||||| ||||||||| |||||||| |  |||||||| || ||||||||| |||| |||||||||||||  ||||||||||||||    
T  4188 aacttatacacagcaaaaactgaaaaaactcgataatcaata--agtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaaca 4285  T
Q  120 gggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcatacc 219  Q
    || ||||||||||| ||||||||||||||||||| | || |||||| ||||||||||||| |||   |||||||||||||| || |||||||||||||||    
T  4286 ggaaaggaaggtggtacaagacttccaacacaaatcttagctccattgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcatacc 4382  T
Q  220 aaaacagcttct 231  Q
    ||||||||||||    
T  4383 aaaacagcttct 4394  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 41967036 - 41966911
Alignment:
Q  101 cttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgt 200  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||  || |||  |||| ||||||||||||||||||| ||| ||||    
T  41967036 cttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgt 41966937  T
Q  201 gcactcttcaaatcataccaaaacag 226  Q
     |||||||||||||||||||||||||    
T  41966936 tcactcttcaaatcataccaaaacag 41966911  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 37462234 - 37462410
Alignment:
Q  56 tcaaaacaagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaac 155  Q
    |||||| || ||||||||| ||||||||||||| |  | |||||||||| || |||||||||||||||| | |||||  ||||||||| ||||||||| |    
T  37462234 tcaaaagaaataccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatc 37462333  T
Q  156 at---aactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagctt 229  Q
    ||   | ||||||  |||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  37462334 atagcagctccattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctt 37462410  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 29453613 - 29453500
Alignment:
Q  120 gggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcatacc 219  Q
    |||||||||||||| ||||||||||||||||||| |||| ||  || ||||| |||||||||||||||| ||||||||||| ||||||| | ||||||||    
T  29453613 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcatacc 29453514  T
Q  220 aaaacagcttctca 233  Q
    ||||||||||||||    
T  29453513 aaaacagcttctca 29453500  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 29468090 - 29467976
Alignment:
Q  119 agggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcatac 218  Q
    ||||||||||||||| ||||||||||||||||||| |||| || |||  |||| ||||||||||||||||||| |||| ||| ||||||| | |||||||    
T  29468090 agggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcatac 29467991  T
Q  219 caaaacagcttctca 233  Q
    ||||||| |||||||    
T  29467990 caaaacaacttctca 29467976  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 29423097 - 29423211
Alignment:
Q  119 agggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcatac 218  Q
    ||||||||||||||  ||||||||||||||||||| |||  ||  || ||||| ||||||||||| |||| ||||||||||| ||||||| | |||||||    
T  29423097 agggaaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcatac 29423196  T
Q  219 caaaacagcttctca 233  Q
    |||||||||||||||    
T  29423197 caaaacagcttctca 29423211  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 29443577 - 29443517
Alignment:
Q  173 aggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctca 233  Q
    ||||||||||||||||||||||||   | ||||||| | ||||||||||||||||||||||    
T  29443577 aggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctca 29443517  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 26574700 - 26574824
Alignment:
Q  129 ggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagct 228  Q
    ||||| ||||||||||||||||||| |||| |  |||  |||||| ||  | ||| || || |||||||||   ||||| |||||||||||||||||| |    
T  26574700 ggtggtacaagacttccaacacaaatcatagcgtcatccaaatcaagatcttcttgaaaatgactaacttgattactctccaaatcataccaaaacagat 26574799  T
Q  229 tctcaacatctaccctcaacaaaac 253  Q
    || ||||||||||||||||||||||    
T  26574800 tcacaacatctaccctcaacaaaac 26574824  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 45230256 - 45230351
Alignment:
Q  135 acaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
    ||||| ||| || |||||| ||| ||| ||| ||||  ||||||||||| ||||| | |||||||| ||||||| |||||||||||||||||||||    
T  45230256 acaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 45243531 - 45243613
Alignment:
Q  148 cacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttc 230  Q
    |||||| ||| ||| ||| ||||  ||||||||||| ||||||| ||| |||| |||| || | |||||||||||||||||||    
T  45243531 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttc 45243613  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 45237760 - 45237869
Alignment:
Q  121 ggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcatacca 220  Q
    ||||||||||||| ||||| ||| || |||||| ||| ||| |||  |||  ||||||||||  ||||||| |||||||| || |||| |  ||||||||    
T  45237760 ggaaggaaggtggtacaaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 45237859  T
Q  221 aaacagcttc 230  Q
    ||||| ||||    
T  45237860 aaacaacttc 45237869  T

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