View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10408_low_16 (Length: 253)

Name: NF10408_low_16
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10408_low_16
NF10408_low_16
[»] chr1 (3 HSPs)
chr1 (15-253)||(41859314-41859552)
chr1 (15-253)||(41887220-41887453)
chr1 (15-216)||(41878222-41878423)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 41859552 - 41859314
Alignment:
Q  15 atgaatgataattttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtattttgttctattagg 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41859552 atgaatgataatcttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtcttttgttctattagg 41859453  T
Q  115 attgatccccatttggctatgtcatccttcacaattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta 214  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41859452 attgatccccattttgctatgtcatccttcacgattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta 41859353  T
Q  215 atcatttttattaaatcagaatgaaaaagatatttagtt 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41859352 atcatttttattaaatcagaatgaaaaagatatttagtt 41859314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 41887453 - 41887220
Alignment:
Q  15 atgaatgataattttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtattttgttctattagg 114  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  || ||||| ||| |||||    
T  41887453 atgaatgatcattttgcagggatggtcacaaagcttagtttgtaaatcattctttaggactttgaaattctgcatcacat--gtcttttgctctgttagg 41887356  T
Q  115 attgatccccatttggctatgtcatccttcacaattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta 214  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||| ||||||||||||||||||| |||||    
T  41887355 attgatccccagtttgctatgtcatccttcacaattatcgcttgaattttatccccctaataac---aagaatcgtaaattaaaaccaaacatgtattta 41887259  T
Q  215 atcatttttattaaatcagaatgaaaaagatatttagtt 253  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  41887258 atcattttaattaaatcagaatgaaaaagacatttagtt 41887220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 41878423 - 41878222
Alignment:
Q  15 atgaatgataattttgcatggatgatcacaaagcttaatttgtaaatcattatttaggactttgaaattctgcatcacatatgtattttgttctattagg 114  Q
    ||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| || || |||    
T  41878423 atgaatgatcatcttgcagggatggtcacaaagcttaaattgtaaatcattctttaggactttgaaattctgcatcacatatgtcttttgctcaatgagg 41878324  T
Q  115 attgatccccatttggctatgtcatccttcacaattatcgcttgaattttatccccctgataacaaaaagaatcataaattaaaaccaaacatgcattta 214  Q
    || |||||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||| ||||||||||    
T  41878323 atcgatccccactttgctatgtcatccttcacaattatcccttgaattttatccccctaataacaaaaagaagcttaaattaaaaccaagcatgcattta 41878224  T
Q  215 at 216  Q
    ||    
T  41878223 at 41878222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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