View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_17 (Length: 251)
Name: NF10408_low_17
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_17 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 40464458 - 40464694
Alignment:
| Q |
14 |
agactcgctagttcgatcggtaattcttttgacatgtgccttaatgaatcacctattggaatttaaattccacaccatccatgagaaaaatattggagct |
113 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40464458 |
agactcgctagtttgaccggtaattcttttgacatgtgccttaatgaatcacctattggaatttaaattccacaccatccatgagaaaaatatttgagct |
40464557 |
T |
|
| Q |
114 |
agaaagaaggttgtaccaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464558 |
agaaagaaggttgtaccaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttct |
40464657 |
T |
|
| Q |
214 |
cctactgttttaccagtaagctgcagcatagtatata |
250 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
40464658 |
cctactgtttcaccagtaagctgcagcatagtatata |
40464694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 77801 - 77694
Alignment:
| Q |
131 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttttaccagt |
230 |
Q |
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|||||||||| || ||||| ||||| |||| | | | ||| |||||||||||||||||||| ||||| || || || |||||||||||||||| |||||| |
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| T |
77801 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgtttcaccagt |
77702 |
T |
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| Q |
231 |
aagctgca |
238 |
Q |
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||||||| |
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| T |
77701 |
tagctgca |
77694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 40888483 - 40888590
Alignment:
| Q |
131 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttttaccagt |
230 |
Q |
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|||||||||| || ||||| ||||| |||| | | | ||| |||||||||||||||||||| ||||| || || || |||||||||||||||| |||||| |
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| T |
40888483 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcctactgtttcaccagt |
40888582 |
T |
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| Q |
231 |
aagctgca |
238 |
Q |
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||||||| |
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| T |
40888583 |
tagctgca |
40888590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 21626732 - 21626639
Alignment:
| Q |
128 |
accaacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgt |
221 |
Q |
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||||||||||||| || ||||| |||||||||| ||| ||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||| |
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| T |
21626732 |
accaacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcatgcctgctactgccttcacttctcccactgt |
21626639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 28270720 - 28270827
Alignment:
| Q |
131 |
aacctggtaatgctataaaggcatcagaatttctagacatttcagctttcctttgatgcatgtcagctactgctttcacttctcctactgttttaccagt |
230 |
Q |
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|||||||||| || ||||| ||||| |||| ||| ||| || || |||||||||||||| || ||||| ||||| |||||||| || |||| |||||| |
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| T |
28270720 |
aacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcatatctgctacagcttttacttctcccaccgtttcaccagt |
28270819 |
T |
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| Q |
231 |
aagctgca |
238 |
Q |
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||||||| |
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| T |
28270820 |
tagctgca |
28270827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 25026912 - 25026961
Alignment:
| Q |
163 |
ctagacatttcagctttcctttgatgcatgtcagctactgctttcacttc |
212 |
Q |
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|||| |||||||||||||||||||||||| |||| ||| ||| ||||||| |
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| T |
25026912 |
ctagccatttcagctttcctttgatgcatatcagatacagctctcacttc |
25026961 |
T |
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