View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_18 (Length: 241)
Name: NF10408_low_18
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31161752 - 31161974
Alignment:
| Q |
1 |
ttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagct |
100 |
Q |
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| T |
31161752 |
ttgaattattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagct |
31161851 |
T |
|
| Q |
101 |
tcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31161852 |
tcagttcaagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgca |
31161951 |
T |
|
| Q |
201 |
ttttaaacctctcacgtgttatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31161952 |
ttttaaacctctcacgtgttatt |
31161974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 31201496 - 31201699
Alignment:
| Q |
19 |
tatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaa |
118 |
Q |
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||||||||||||||| ||||||||||| | ||||||||||||||||||| |||| | | ||||||||||||||||||||| | |||||||||||| | |
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| T |
31201496 |
tatatagtttgaacaagaaagagaacatgttacctcattcttggaatgctatatgaggcaatataatgtctctagggaagctgccattcaagaaggtcga |
31201595 |
T |
|
| Q |
119 |
aagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacctctcacgtg |
218 |
Q |
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|| || ||||| ||||||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||||||||||||||||| |||| || |||||| |
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| T |
31201596 |
aatagaattgctgatgcttggaaagatatgaataaggaatgttttagaccaactgaagttccaatgccttttcttacacgcattctaaatctgtcacgtt |
31201695 |
T |
|
| Q |
219 |
ttat |
222 |
Q |
| |
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|||| |
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| T |
31201696 |
ttat |
31201699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 41349564 - 41349367
Alignment:
| Q |
20 |
atatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaa |
119 |
Q |
| |
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|||||||||||||| |||||||||||| | |||||||||||||||||||| |||| | | |||||| ||||||| |||| | | |||||||||||| || |
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| T |
41349564 |
atatagtttgaacaaaaaagagaacatgtttcctcattcttggaatgctatatgaggcaatataatatctctagagaagttgccattcaagaaggtcgaa |
41349465 |
T |
|
| Q |
120 |
agaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacctctcacgt |
217 |
Q |
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|||| |||| |||||||||||||||| ||||| ||||||||| | |||| || || ||||||||||||| | |||||| ||||| | |||||| |
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| T |
41349464 |
agagaattgtagatgcttggaaagatattaataaagaatgtcttatgtcaaccgaggtttcaatgccttttctgatgcgcattctaaacttatcacgt |
41349367 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 25834799 - 25834958
Alignment:
| Q |
35 |
aaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagaggattgccaatg |
134 |
Q |
| |
|
|||||||||||| | | |||||| ||||| |||||||||||| ||||| || | |||||||||||| | |||||||| | || ||| | ||||| | || |
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| T |
25834799 |
aaaagagaacatgtttgctcattgttggattgctacatgaagcagtatgatatgtctagggaagctgctattcaagaatgccataagggaattgcaattg |
25834898 |
T |
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| Q |
135 |
cttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttctta |
194 |
Q |
| |
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||||||||||||| ||| || |||||||||||||||| || |||||||||||||||||| |
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|
| T |
25834899 |
cttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgccttttctta |
25834958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 4314755 - 4314554
Alignment:
| Q |
7 |
tattattcgttgtatatagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagtt |
106 |
Q |
| |
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||||||| |||| |||||||||||| | |||||||| ||| | || ||||||||||||||||| |||||| | ||||| ||||||| |||| | | || |
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| T |
4314755 |
tattatttgttgcatatagtttgaataaaaaagagatcatgtttcttcattcttggaatgctatatgaagcaacataatatctctagagaaggtgccatt |
4314656 |
T |
|
| Q |
107 |
caagaaggtcaaaagaggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaa |
206 |
Q |
| |
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|||||||||| ||| || |||| ||||||||||||||||||||||| ||||||||| ||| || ||| |||||||||||||| | || ||||||||| |
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| T |
4314655 |
caagaaggtcgaaaaagaattgttgatgcttggaaagatatgaataaggaatgtcttatgccgactgaagttccaatgccttttttgacgtgcattttaa |
4314556 |
T |
|
| Q |
207 |
ac |
208 |
Q |
| |
|
|| |
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|
| T |
4314555 |
ac |
4314554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 25794182 - 25794370
Alignment:
| Q |
22 |
atagtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaag |
121 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||||| |||| || || ||||| | ||| |||| |||||||||||| | |||||||||| | |||| |
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| T |
25794182 |
atagtttgaacaaaaaagagaacatgtttcctcattcctggagtgttatatgaaagaatatgatgtgtctagggaagctgccattcaagaaggccgaaag |
25794281 |
T |
|
| Q |
122 |
aggattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcattttaaacct |
210 |
Q |
| |
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|| ||| |||||||||||||||| ||| | ||||||||| |||||| ||| |||| ||| |||| | | |||||||||| |||| |
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| T |
25794282 |
agaattcttgatgcttggaaagatataaatgaagaatgtcttatgccaactgaagttcctatgaattttgtgagacgcattttagacct |
25794370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 17183098 - 17183276
Alignment:
| Q |
24 |
agtttgaacagaaaagagaacatatgtcctcattcttggaatgctacatgaagaagtataatgtctctagggaagcttcagttcaagaaggtcaaaagag |
123 |
Q |
| |
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|||||||||| ||||||| |||| | |||||||||||||||||||| |||||| | || ||| | ||||| |||||||| |||||||| | ||||| || |
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| T |
17183098 |
agtttgaacataaaagaggacatgtttcctcattcttggaatgctatatgaaggaatacaatatatctagagaagcttctattcaagaatgccaaaaaag |
17183197 |
T |
|
| Q |
124 |
gattgccaatgcttggaaagatatgaataagcaatgtcttaggccaacagaaattccaatgccttttcttacacgcatt |
202 |
Q |
| |
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||| ||||||||||||||||| ||| | ||||||||| |||||| || |||||| || |||||| || |||||| |
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|
| T |
17183198 |
agttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgctttttctaactcgcatt |
17183276 |
T |
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