View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_19 (Length: 240)
Name: NF10408_low_19
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_19 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 44475203 - 44475425
Alignment:
| Q |
18 |
gttcgatatccatgcacgtgtataaacgcagattatttcaagtccagatcctagtatgcggggttcctctctcaagcggtgcacgacgaatccatttgat |
117 |
Q |
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| T |
44475203 |
gttcgatatccatgcacgtgtataaatgcagattatttcaagtccagatcctagtatgcggggttcctctctcaagcggtgcacgacgaatccatttgat |
44475302 |
T |
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| Q |
118 |
ctggtaccagcaaattgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatg |
217 |
Q |
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| T |
44475303 |
ctggtacaagcaaattgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatg |
44475402 |
T |
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| Q |
218 |
gctaccctcctgtaacattcaac |
240 |
Q |
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| T |
44475403 |
gctaccctcctataacattcaac |
44475425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 44485525 - 44485634
Alignment:
| Q |
131 |
attgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcctgt |
230 |
Q |
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||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| || |||||||||||| |
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| T |
44485525 |
attgtataggcaaaatctgcaatatgatctttgttaggtttggaacaaatggttggatgccagagtctgccaccttatactacggtgactaccctcctgt |
44485624 |
T |
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| Q |
231 |
aacattcaac |
240 |
Q |
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| T |
44485625 |
tacattcaac |
44485634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 44471251 - 44471348
Alignment:
| Q |
131 |
attgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcct |
228 |
Q |
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| T |
44471251 |
attgtataggaaaaatctgcaatatgcactttgttagtgttggaagagatggttggataccagagaccgccatcgtataccaccgtgactaccctcct |
44471348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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