View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10408_low_2 (Length: 501)
Name: NF10408_low_2
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 39554303 - 39553836
Alignment:
| Q |
19 |
gagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554303 |
gagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaag |
39554204 |
T |
|
| Q |
119 |
ggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggtaaaatattattcatttaaaaatcaatgcaacatgtctacaaatttattagtatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554203 |
ggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggtaaaatattattcatttaaaaatcaatgcaacatgtctacaaatttattagtatt |
39554104 |
T |
|
| Q |
219 |
atttatagtgttttaattatcatcgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatg |
318 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554103 |
atttatagtgttttaattatcattgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatg |
39554004 |
T |
|
| Q |
319 |
cctattctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39554003 |
cctattctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtc |
39553904 |
T |
|
| Q |
419 |
acttctgaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39553903 |
acttctgaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
39553836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 225 - 486
Target Start/End: Complemental strand, 39544078 - 39543817
Alignment:
| Q |
225 |
agtgttttaattatcatcgttactatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctatt |
324 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
39544078 |
agtgttttaatcgtcattgttactatgcagacaacatggatgaaatgtggtggattagtagtggcttgcacttttgaccatcgtatagcggacgcatatt |
39543979 |
T |
|
| Q |
325 |
ctgcaaacatgttccttgtatcatgggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttct |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| | |
|
|
| T |
39543978 |
ctgcaaacatgttccttgtatcatgggccgagatagctcgacccaacaataacaagtctttgatcccaacaatgcaaccttgttttagacggtcacttat |
39543879 |
T |
|
| Q |
425 |
gaccccacgacgcccaccttccatccatccttcaatttatgacatgtatgtccccatctctg |
486 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39543878 |
gaccccacgacgcccaccttccatacatccttcactttatgacatgtatgtccccatctctg |
39543817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 250 - 484
Target Start/End: Complemental strand, 39587182 - 39586948
Alignment:
| Q |
250 |
tgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatcatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| ||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
39587182 |
tgcaggcaacttggatgaaatgtggtgggttagtagtggcgtgcaattttgaccatcgaatagccgacgcctattctgcaaacatgtttcttgtatcatg |
39587083 |
T |
|
| Q |
350 |
ggccgagatagctcggcccaatgataacaagtctttgatcccaacaacgcaaccttgttttcgacggtcacttctgaccccacgacgcccaccttccatc |
449 |
Q |
| |
|
|||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
39587082 |
ggccgagatagcccgatcgagcaataacaagtctttgatcccaacaacacaaccttgttttcaaaggtcccttctgaccccaagacacccaccttccatc |
39586983 |
T |
|
| Q |
450 |
catccttcaatttatgacatgtatgtccccatctc |
484 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||| |
|
|
| T |
39586982 |
catccttcactctatgacatgtacatccccatctc |
39586948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 39544989 - 39544844
Alignment:
| Q |
19 |
gagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39544989 |
gagttactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaag |
39544890 |
T |
|
| Q |
119 |
ggaaacttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
164 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39544889 |
ggaagcttgttccaaagaagaaacatggtgtgcttgctgctcaggt |
39544844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 39587416 - 39587275
Alignment:
| Q |
23 |
tactttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaa |
122 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||||||| |
|
|
| T |
39587416 |
tactttgcaataaccgtggtgtggattttgttgaagctgttgctgatgttgagttgcaatctctcgatttgtataagccagaggaaaccattgaagggaa |
39587317 |
T |
|
| Q |
123 |
acttgttccaaagaagaaacatggtgtgcttgctgttcaggt |
164 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
39587316 |
gcttgttccaaagaagaaatatggtgtacttgctgttcaggt |
39587275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 17484883 - 17484768
Alignment:
| Q |
37 |
cgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaacttgttccaaaga |
136 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||| | |||| |||||||| ||||| || |||||| |||||||||| || ||||||| |||| |
|
|
| T |
17484883 |
cgtggtgttgattttgttgaagctgttgctgatgttgagcttcaatgcctcaatttttataaccctgatgaatctgttgaaggaaagtttgttcctaaga |
17484784 |
T |
|
| Q |
137 |
agaaacatggtgtgct |
152 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
17484783 |
agaagcatggcgtgct |
17484768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 17503893 - 17503782
Alignment:
| Q |
247 |
ctatgcaggcaacttggatgaaatgtggtggtttagtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatc |
346 |
Q |
| |
|
||||||||||||||| | || |||||||| |||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
17503893 |
ctatgcaggcaacttcattaaagtgtggtgggatagtagtggcatgcacatttgatcatcgcatagcagatgcatattcaacaaacatgttcctagtatc |
17503794 |
T |
|
| Q |
347 |
atgggccgagat |
358 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17503793 |
atgggccgagat |
17503782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 17507170 - 17507043
Alignment:
| Q |
25 |
ctttgcaacaatcgtggagtggattttgttgaagcttttgctgatgttgagttacaatctctcaatttgtataatccagatgaaactgttgaagggaaac |
124 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||| ||||||||||||| | |||| |||||||| ||||| || |||||| |||||||||| || |
|
|
| T |
17507170 |
ctttgtaataatcgtggtgttgattttgttgaagctgttgctgatgttgaacttcaatgcctcaatttttataaccctgatgaatctgttgaaggaaagt |
17507071 |
T |
|
| Q |
125 |
ttgttccaaagaagaaacatggtgtgct |
152 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |
|
|
| T |
17507070 |
ttgttcctaagaagaagcatggcgtgct |
17507043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 17475735 - 17475654
Alignment:
| Q |
282 |
gtagtggcttgcacttttgaccatcgtatagctgatgcctattctgcaaacatgttccttgtatcatgggccgagatagctc |
363 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| |||||||| || ||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
17475735 |
gtagtggcatgcacatttgatcatcgcatagcagatgcctactcaacaaacatgttcttagtatcatgggccgagatggctc |
17475654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University