View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10408_low_20 (Length: 240)
Name: NF10408_low_20
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_20 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 41859055 - 41859278
Alignment:
| Q |
18 |
ttgtgattcactttaattttgtttttccccc-tgttccttgtgatttaagctactgttttgtaccttcgtttatgaatgctgaacatttactatgacagt |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41859055 |
ttgtgattcactttaattttgttttccccccctattccttgtgatttaagctactgttttgtaccttcgtttatgaatgctgaacatttactatgacagt |
41859154 |
T |
|
| Q |
117 |
gtaggatggatggcaggaccatttgacactgtcaaaggggttaataccaccaaggaagaatggaagattggagttcgaataacagatatgtggattgtta |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41859155 |
gtaggaccgatggcaggaccatttgacactgtcaaaggggttaataccaccaaggaagaatggaagattggagttcgaataacagatatgtggattgtta |
41859254 |
T |
|
| Q |
217 |
caaacatgaataaccatcaacatc |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41859255 |
caaacatgaataaccatcaacatc |
41859278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 41886964 - 41887184
Alignment:
| Q |
18 |
ttgtgattcactttaattttgtttttccccctgttccttgtgatttaagctactgttttgtaccttcgtttatgaatgctgaacatttactatgacagtg |
117 |
Q |
| |
|
||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||| |
|
|
| T |
41886964 |
ttgtgattccctttaattttttttt--cccctattccttgtgatttaagctactgttttgtaccttcgtttgtgaaagctaaacatttattatgacagtg |
41887061 |
T |
|
| Q |
118 |
taggatggatggcaggaccatttgacactgtcaaaggggttaataccaccaaggaagaatggaagattggagttcgaataacagatatgtggattgttac |
217 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41887062 |
taggatcgatggcagaaccatttgacactgtcaaagggattaataccaccaaggaagaatggaagattggagttagaataacagatatgtggattgttac |
41887161 |
T |
|
| Q |
218 |
aaacatgaataaccatcaacatc |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41887162 |
aaacatgaataaccatcaacatc |
41887184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 41877981 - 41878169
Alignment:
| Q |
55 |
ttgtgatttaagctactgttttgtaccttcgtttatgaatgctgaacatttactatgacagtgtaggatggatggcaggaccatttgacactgtcaaagg |
154 |
Q |
| |
|
|||||||||||| || ||||||| ||||| ||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41877981 |
ttgtgatttaagttaaggttttgtgccttcatttgtgaaatctgaacatttattatgacagtgtaggatcgatggcaggaccatttgacactgtcaaagg |
41878080 |
T |
|
| Q |
155 |
ggttaat---accaccaaggaagaatggaagattggagttcgaataacagatatgtggattgttacaaacatgaataaccatcaacatc |
240 |
Q |
| |
|
| ||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41878081 |
gattaataccaccaccaaggaaaaatggatgattggagttagaataacagatatgtggattgttacaaacatgaataaccatcaacatc |
41878169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University