View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_21 (Length: 229)
Name: NF10408_low_21
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 33634250 - 33634151
Alignment:
| Q |
6 |
cgagagagaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
105 |
Q |
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| T |
33634250 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 33634084 - 33634042
Alignment:
| Q |
169 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcct |
211 |
Q |
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| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcct |
33634042 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 29191750 - 29191792
Alignment:
| Q |
169 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcct |
211 |
Q |
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| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcct |
29191792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 29191591 - 29191683
Alignment:
| Q |
19 |
gaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcgttcgca |
102 |
Q |
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| T |
29191591 |
gaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttccttcgca |
29191683 |
T |
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