View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_22 (Length: 216)
Name: NF10408_low_22
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 31161614 - 31161505
Alignment:
| Q |
91 |
tttatatttatacctcattggatgcaatatcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgat |
190 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31161614 |
tttatatttatacctcattggatgcaatgtcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgat |
31161515 |
T |
|
| Q |
191 |
ctcctctgtg |
200 |
Q |
| |
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|||||||||| |
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| T |
31161514 |
ctcctctgtg |
31161505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 41349656 - 41349762
Alignment:
| Q |
93 |
tatatttatacctcattggatgcaatatcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgatct |
192 |
Q |
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||||| |||||||| |||||| ||||||||||||||||||||| || |||||||||||||||| |||||||| |||||||||||||| |||| || | |
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| T |
41349656 |
tatatatatacctcgttggatacaatatcatccattatcctgcaaaggacaatagcagcattaataatttttgactcatttgatacccatttgaatatgt |
41349755 |
T |
|
| Q |
193 |
cctctgt |
199 |
Q |
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||||||| |
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| T |
41349756 |
cctctgt |
41349762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 31201418 - 31201309
Alignment:
| Q |
91 |
tttatatttatacctcattggatgcaatatcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgat |
190 |
Q |
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||||||| | |||||||||||| |||| |||||||||| ||| ||||| | ||| |||||||||| || ||||| ||||||||||||||||||| ||| |
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| T |
31201418 |
tttatatatgtacctcattggacacaatgtcatccattaaccttccaatgataattgcagcattaataacttttggatcatttgatacccacttgaagat |
31201319 |
T |
|
| Q |
191 |
ctcctctgtg |
200 |
Q |
| |
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||||||||| |
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|
| T |
31201318 |
gtcctctgtg |
31201309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31161700 - 31161652
Alignment:
| Q |
1 |
taactcagttggtaaggacaatgtgtacgaggttcgaaccccgaatacc |
49 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
31161700 |
taactcagttggtaaggacaatgcgtacgagattcgaactccgaatacc |
31161652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 4314819 - 4314914
Alignment:
| Q |
91 |
tttatatttatacctcattggatgcaatatcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttga |
186 |
Q |
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||||| || ||||||| |||||||||||||||||||||| ||||| || | |||||||||||| | |||||| || |||||||||||||||||| |
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| T |
4314819 |
tttatcttcatacctcgttggatgcaatatcatccattagcctgcaaaggataatagcagcattgatcatttttattccatttgatacccacttga |
4314914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 25794101 - 25793993
Alignment:
| Q |
92 |
ttatatttatacctcattggatgcaatatcatccattatcctgccaataacaatagcagcattaacaatttttgtttcatttgatacccacttgatgatc |
191 |
Q |
| |
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|||||| |||||||||||||| |||| |||||||||| ||||| || |||| || |||||||| |||||||| |||||||||| |||||||| ||| |
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| T |
25794101 |
ttatatatatacctcattggacacaatgtcatccattagcctgcaaagtacaacagaagcattaagaatttttggctcatttgatatccacttgaagatg |
25794002 |
T |
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| Q |
192 |
tcctctgtg |
200 |
Q |
| |
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|| |||||| |
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|
| T |
25794001 |
tcttctgtg |
25793993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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