View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_25 (Length: 204)
Name: NF10408_low_25
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_25 |
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| [»] scaffold1497 (1 HSPs) |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 13237261 - 13237438
Alignment:
| Q |
18 |
aataaaaatgttattttaccaaattaccttaagaaaaatgtctataaattagacatatggtcaacatcatctcacatcacaactcctctcacacnnnnnn |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237261 |
aataaaaatgttattttaccaaattaccttaagaaaaatgtctataaattagacatatggtcaacatcatctcacatcacaactcctctcacactttttt |
13237360 |
T |
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| Q |
118 |
nnnnnnnnnnnagttgtttattatttgttctctgtagctcttaacaaccaaataactctcaaatacgcctttgcttct |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
13237361 |
tctatttttttagttgtttattatttgttctctgtagctcttaacaaccaaataactctcaaatacgcttttgtttct |
13237438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1497 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold1497
Description:
Target: scaffold1497; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 142 - 314
Alignment:
| Q |
18 |
aataaaaatgttattttaccaaattaccttaagaaaaatgtctataaattagacatatggtcaacatcatctcacatcacaactcctctcacacnnnnnn |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
142 |
aataaaaacgttattttaccaaattaccttaagaaaaatgtctataaattagacatatgttcaacatcatctcacatcacaactcctctcacactttttt |
241 |
T |
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| Q |
118 |
nnnnnnnnnnnagttgtttattatttgttctctgtagctcttaacaaccaaataactctcaaatacgcctttg |
190 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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| T |
242 |
tctatttttttagttgtttattatttgttctttgtagctcttaacaaccaaataactctcaaattcgcttttg |
314 |
T |
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Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 27345410 - 27345233
Alignment:
| Q |
18 |
aataaaaatgttattttaccaaattaccttaagaaaaatgtctataaattagacatatggtcaacatcatctcacatcacaactcctctcacacnnnnnn |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27345410 |
aataaaaattttattttaccaaattaccttaagaaaaatgtctataaattagacatatggttaacatcatctcacatcacaactcctctcacactttttt |
27345311 |
T |
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| Q |
118 |
nnnnnnnnnnnagttgtttattatttgttctctgtagctcttaacaaccaaataactctcaaatacgcctttgcttct |
195 |
Q |
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| T |
27345310 |
tctatttttttacttgtttattatttgttcttcgtagctcttaacaaccaaataactctcaaatacgcttttgtttct |
27345233 |
T |
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Target: scaffold0021 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 130247 - 130412
Alignment:
| Q |
18 |
aataaaaatgttattttaccaaattaccttaagaaaaatgtctataaattagacatatggtcaacatcatctcacatcacaactcctctcacacnnnnnn |
117 |
Q |
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|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
130247 |
aataaaaatgttattttaccaaattaccctaagaaatatgtctataaattagacatatggttaacatcatctcacatcacaactcctctcacac-ttttt |
130345 |
T |
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| Q |
118 |
nnnnnnnnnnnagttgtttattatttgttctctgtagctcttaacaaccaaataactctcaaatacg |
184 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
130346 |
tctatttttttagttgtttattatttgttcttcgtagctcttaacaaccaaataaccctcaaatacg |
130412 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 36721350 - 36721511
Alignment:
| Q |
18 |
aataaaaatgttattttaccaaattaccttaagaaaaatgtctataaattagacatatggtcaacatcatctcacatcacaactcctctcacacnnnnnn |
117 |
Q |
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||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
36721350 |
aataaaaatgttattttaccaaactaccctatgaaatatgtctataaattagacatatggttaacaac---tcacatcacaactcctctcacactttttt |
36721446 |
T |
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| Q |
118 |
nnnnnnnnnnnagttgtttattatttgttctctgtagctcttaacaaccaaataactctcaaatac |
183 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
36721447 |
ctattttttc-agttgtttattatttgttcttcgtagctcttaacaaccaaataaccctctaatac |
36721511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 37263597 - 37263520
Alignment:
| Q |
27 |
gttattttaccaaattaccttaagaaaaatgtctataaattagacatat-ggtcaacatcatctcacatcacaactcc |
103 |
Q |
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||||||||||||||||| | || |||| |||||||||||||| |||||| ||| |||| || ||||||||||||||| |
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| T |
37263597 |
gttattttaccaaattatcctatgaaatatgtctataaattatacatatgggttaacaaaatttcacatcacaactcc |
37263520 |
T |
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