View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10408_low_6 (Length: 386)
Name: NF10408_low_6
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 2561027 - 2560675
Alignment:
| Q |
18 |
aaaactagaggaggacaaataacatcaggcttatataatcaatatctataaccatgattgattaacttgaaattgagacacattttgtattgactaagga |
117 |
Q |
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| T |
2561027 |
aaaactagaggaggacaaataacatcaggcttatataatcaatatctataaccatgattgattaacttgaaattgagacacgttttgtatttactaggga |
2560928 |
T |
|
| Q |
118 |
attgacggactatggaattacatctaagaataatccacttcaattgaaacttgatcccattacatagaatacacacatacatacctgagataccaaacgt |
217 |
Q |
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| T |
2560927 |
attgacggactatggaattacatttaagaataatccacttcaattgaaacttgatcccattacatagaatacacacatacatacctgagataccaaacgt |
2560828 |
T |
|
| Q |
218 |
acagattaggggaaacctaaccgtaacgatgaagcaacacactcacaagggaatcggctagcgtcaaaaaattgttgatatgttagtatagtacatgtcc |
317 |
Q |
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| T |
2560827 |
acagattaggggaaacctaaccgtaacgatgaaccaacacactcacaagggaa----gtagcgtcaaaaaattgttgatatgttagtatagtacatgtcc |
2560732 |
T |
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| Q |
318 |
actatnnnnnnnttataaaattaaataatatgtatttttagagtttttccacaggtt |
374 |
Q |
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| T |
2560731 |
actataaaaaaattataaaattaaataatatgtatttttagagtttttccacaggtt |
2560675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 2559536 - 2559430
Alignment:
| Q |
56 |
tcaatatctataaccatgattgattaacttgaaattgagacacattttgtattgactaaggaattgacggactatggaattacatctaagaataatccac |
155 |
Q |
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| T |
2559536 |
tcaatatccataaccatgattgattaacttgaaattgagacacgttttgtatttaccagggaattgacggactatggaattacatctaagaataatccac |
2559437 |
T |
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| Q |
156 |
ttcaatt |
162 |
Q |
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||||||| |
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| T |
2559436 |
ttcaatt |
2559430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 16933273 - 16933352
Alignment:
| Q |
290 |
tgttgatatgttagtatagtacatgtccactatnnnnnnnttataaaattaaataatatgtatttttagagtttttccac |
369 |
Q |
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|||| |||| ||||||||| ||||||||| ||| |||||||| ||||||||||||||||| |||| |||||||| |
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| T |
16933273 |
tgttaatatcttagtatagaacatgtccattataaacaaattataaaaataaataatatgtattttgagagcttttccac |
16933352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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