View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10408_low_7 (Length: 360)
Name: NF10408_low_7
Description: NF10408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10408_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 45359056 - 45358729
Alignment:
| Q |
19 |
atacaggagttaatcaacataaataacataaacagtgccattggtacgtccgtacaacgtttgaaaattacagaatgatcttcctctatctcagcatagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45359056 |
atacaggagttaatcaacataaataacataaacagtgccattggtacgtccgtacaacgtttgaaaattacagaatgatcttcctctatctcagcatagg |
45358957 |
T |
|
| Q |
119 |
ttttttcttatccatgtgcccaaacatataccgatattgttttgcagtaccatctttatgagactatatgcttaactttcacgctgcacataaaaacagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45358956 |
ttttttcttatccatgtgcccaaacatataccaatattgttttgcagtaccatctttatgagactatatgcttaactttcacgctgcacataaaaacagt |
45358857 |
T |
|
| Q |
219 |
ttctgtttaccatgttccaagacttcccgatatcttatgctccttcatttttgattcatgtttgtataattattctgcataaaaaactagatacccattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
45358856 |
ttctgtttaccatgttccaagacttcccgatatcttatgctccttcatttttgattcatgtttgtata---attctgcataaaaaactagatacccactt |
45358760 |
T |
|
| Q |
319 |
gaacgtgcccaggtttcccttccactttcat |
349 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
45358759 |
gaacttgcccaggtttcccttccactttcat |
45358729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University