View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_high_5 (Length: 222)
Name: NF10409_high_5
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 19831227 - 19831439
Alignment:
| Q |
18 |
ggtacaatatgagattgttattttaatatgattttatctgatctagttttgtttctgtnnnnnnnnnnnt----------tagttttgtgaaaagataaa |
107 |
Q |
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| T |
19831227 |
ggtacaatatgagtttgttattttaatatgattttatctgatctagttttgtttctgtaaaaaaaaaaaaaaaaaaaaagtagttttgtgaaaagataaa |
19831326 |
T |
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| Q |
108 |
taataatctacagttcataagtttattattaatgaccgtcagaattccaaaatctaaggaaaaaactcatgaagacattttcctgaaagaaaaagcagag |
207 |
Q |
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| T |
19831327 |
taataatgta--gttcataagttgattattaatgaccgtcagaattccaaaatctaagtaaaaaactcatgaagacattttcctgaaagaaaaagcagag |
19831424 |
T |
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| Q |
208 |
agagaaggtaaataa |
222 |
Q |
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||||||||||||||| |
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| T |
19831425 |
agagaaggtaaataa |
19831439 |
T |
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