View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_1 (Length: 487)
Name: NF10409_low_1
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 37 - 468
Target Start/End: Complemental strand, 51274120 - 51273689
Alignment:
| Q |
37 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataataaggttcacaaacaaggccttcgagtacacggtcacgtttattgtga |
136 |
Q |
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| T |
51274120 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataataaggttcacaaacaaagccttctagtacacggtcacgtttattgtga |
51274021 |
T |
|
| Q |
137 |
ccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcagagaa |
236 |
Q |
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| T |
51274020 |
ccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcagagaa |
51273921 |
T |
|
| Q |
237 |
acaagccatttgaaaatccgacaattctcgaatataagacatgnnnnnnncttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaa |
336 |
Q |
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| T |
51273920 |
acaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaa |
51273821 |
T |
|
| Q |
337 |
tgaaatttgattttcaggagtagaaagattaagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttt |
436 |
Q |
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| T |
51273820 |
tgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttt |
51273721 |
T |
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| Q |
437 |
tcttgttctttcatttgttggagcaaagtatg |
468 |
Q |
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| T |
51273720 |
tcttgttctttcatttgttggagcaaagtatg |
51273689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 48403146 - 48403187
Alignment:
| Q |
390 |
gaagtttacgctttgagataaaattgaagtgccattttttct |
431 |
Q |
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| T |
48403146 |
gaagtttacactttgagataaaattgaagtgccattctttct |
48403187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 92 - 389
Target Start/End: Complemental strand, 14908094 - 14907797
Alignment:
| Q |
92 |
ggttcacaaacaaggccttcgagtacacggtcacgtttattgtgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgt |
191 |
Q |
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| T |
14908094 |
ggttcgcaaacaaagccttcatgtacacggtcacgctcattatgactggttcgtagcggtggagggagtggaaatttgatcctatcttttgtgaggatgt |
14907995 |
T |
|
| Q |
192 |
tgcatacatggtagactctaccacgtgtggttttcttgcagagaaacaagccatttgaaaatccgacaattctcgaatataagacatgnnnnnnncttgt |
291 |
Q |
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|||| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||| ||||| |
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| T |
14907994 |
tgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttgt |
14907895 |
T |
|
| Q |
292 |
tatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattaagatttggtgagaacgaaatga |
389 |
Q |
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| T |
14907894 |
tatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggttttcaggagtagaaagattgagattgggtgagaacgaaatga |
14907797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 247 - 467
Target Start/End: Original strand, 5051458 - 5051676
Alignment:
| Q |
247 |
tgaaaatccgacaattctcgaatataagacatgnnnnnnncttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttga |
346 |
Q |
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||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||| ||| ||||||| | | |||||||| |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataagg-atgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttgg |
5051556 |
T |
|
| Q |
347 |
ttttcaggagtagaaagattaagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctt |
446 |
Q |
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||| ||||||||||||||| ||||| | ||||||| | | ||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
5051557 |
tttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgcta-cttttctggttttcttcttctt |
5051655 |
T |
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| Q |
447 |
tcatttgttggagcaaagtat |
467 |
Q |
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| T |
5051656 |
tcatttgttggaccaaagtat |
5051676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 5051299 - 5051458
Alignment:
| Q |
37 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaggccttcgagtacacggtcacgttta- |
130 |
Q |
| |
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||||||||||||||||||||||||||| |||||| || | | ||||||||| |||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
5051299 |
gaacctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttat |
5051397 |
T |
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| Q |
131 |
ttgtgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgt |
191 |
Q |
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| T |
5051398 |
ttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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