View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_10 (Length: 256)
Name: NF10409_low_10
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 40675305 - 40675537
Alignment:
| Q |
17 |
acattgcacattttccggtgattagagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaatagagagttacaacaatttgcttta |
116 |
Q |
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| T |
40675305 |
acattgcacattttccggtgatttgagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaatagagagttacaacaatttgcagta |
40675404 |
T |
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| Q |
117 |
tcatcttcatctcatttttatagccgttttccaaaatcattctctttacgtaggaaagtgccatggtggtaccaaatactccatccacgttcaccatttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40675405 |
tcatcttcatctcatttttatagccgttttccaaaatcattctctttacgtaagaaagtgccatggtggtaccaaatactccatccacgttcaccatttg |
40675504 |
T |
|
| Q |
217 |
tggcaaaatggaacgtaacattcctctctgctt |
249 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
40675505 |
tggcaaaatggaacgtaacattcctctatgctt |
40675537 |
T |
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