View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_12 (Length: 248)
Name: NF10409_low_12
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4599010 - 4598769
Alignment:
| Q |
1 |
caaccatttaatattttttggttctttcctaatcaaatcaattgtctaataannnnnnnnnnn---gaaaattctaataaatttaaatcataggtatgaa |
97 |
Q |
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| T |
4599010 |
caaccatttaatattttttggttctttcctaatcaaatcaattgtctaataattttatttttttttgaaaattctaataaatttaaatcataggtatgaa |
4598911 |
T |
|
| Q |
98 |
cgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttcttctgcaatc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4598910 |
cgaggacaatgattcaacgctgtcactcgaagaggcgctcatggatactaacagaattgactactattatcgtcatctatattatgtttcttctgcaatc |
4598811 |
T |
|
| Q |
198 |
aggtagcacccttttacttctactaaattattttctctctct |
239 |
Q |
| |
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| T |
4598810 |
aggtagcacccttttacttctattaaattattttctctctct |
4598769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 4623447 - 4623302
Alignment:
| Q |
64 |
gaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattacta |
163 |
Q |
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| T |
4623447 |
gaaaattctaataaatttaaatcataggtatgaatgaagtcaatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattactt |
4623348 |
T |
|
| Q |
164 |
ttatcgtcatctatattatgtttcttctgcaatcaggtagcaccct |
209 |
Q |
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| T |
4623347 |
ttatcgtcatctatattatcttttatctgcaatgaggtagcaccct |
4623302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 25016140 - 25016030
Alignment:
| Q |
88 |
taggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttc |
187 |
Q |
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| T |
25016140 |
taggtatggacgagctcaatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttc |
25016041 |
T |
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| Q |
188 |
ttctgcaatca |
198 |
Q |
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|||||||||| |
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| T |
25016040 |
atctgcaatca |
25016030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 25037423 - 25037313
Alignment:
| Q |
88 |
taggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttc |
187 |
Q |
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|||||||| ||||| |||||| ||||||| ||||| |||||||| |||||||||||| ||||||| ||||||| |||||| ||||| |||||| |||| |
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| T |
25037423 |
taggtatggacgagttaaatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttc |
25037324 |
T |
|
| Q |
188 |
ttctgcaatca |
198 |
Q |
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|||||||||| |
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| T |
25037323 |
atctgcaatca |
25037313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 25002270 - 25002311
Alignment:
| Q |
141 |
gatactaacagaattgattactattatcgtcatctatattat |
182 |
Q |
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| T |
25002270 |
gatactgacagaattgattacttttatcgtcatctttattat |
25002311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 18805556 - 18805701
Alignment:
| Q |
64 |
gaaaattctaataaatttaaatcataggtatgaacgaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattacta |
163 |
Q |
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||||| ||||||||||||||||||||||| | || ||| || ||||| |||| || |||||||||||| | |||||||||| | | |||||||||||| | |
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| T |
18805556 |
gaaaactctaataaatttaaatcataggtttaaatgagtacgatgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattacca |
18805655 |
T |
|
| Q |
164 |
ttatcgtcatctatattatgtttcttctgcaatcaggtagcaccct |
209 |
Q |
| |
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|||||||||||| ||||| ||| | ||||||||||||||||||||| |
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| T |
18805656 |
ttatcgtcatctttattacgttgcatctgcaatcaggtagcaccct |
18805701 |
T |
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