View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_13 (Length: 238)
Name: NF10409_low_13
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4599074 - 4599296
Alignment:
| Q |
1 |
tgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaaca |
100 |
Q |
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| T |
4599074 |
tgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaaca |
4599173 |
T |
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| Q |
101 |
tataaccaagttgcagcctgcacatattgtttagttaagaatactggtacaacttaatttgcgagtacaccatagaagtttccatcaaataatatataac |
200 |
Q |
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| T |
4599174 |
tataaccaagttgcagcctgcacatattgtttagttaagagtactggtacaacttaatttgcgagtacatcatagaagtttccatcaaataatatataac |
4599273 |
T |
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| Q |
201 |
aataattacaagagagtcttact |
223 |
Q |
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| T |
4599274 |
aataattgcaagagagtcttact |
4599296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 4623501 - 4623637
Alignment:
| Q |
1 |
tgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaaca |
100 |
Q |
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| T |
4623501 |
tgtaatataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaataccctttggacaaaca |
4623600 |
T |
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| Q |
101 |
tataaccaagttgcagcctgcacatattgtttagtta |
137 |
Q |
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| T |
4623601 |
tataaccaagttgcagcctgcacatattgtttagtta |
4623637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 25016383 - 25016481
Alignment:
| Q |
12 |
tattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag |
110 |
Q |
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| T |
25016383 |
tattaccattttctgttatgtaaatcaatggattattatactttgtctttgtgtgcaacagtagttcctgaatcccccttggataaacaaatagccaag |
25016481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 25037649 - 25037744
Alignment:
| Q |
15 |
taccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatataaccaag |
110 |
Q |
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| T |
25037649 |
taccattttcggttatgtaaatcacagggttgttatactttgtctttgtgtacaacagtagttcttgaatcccccttggataaacaaatagccaag |
25037744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 18805481 - 18805349
Alignment:
| Q |
5 |
atataaatattaccattttctgttatgataatcgtaggattgttatacttttcctttgtgtacaacagtaggtcctgaatcccctttggacaaacatata |
104 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||| || ||||||||||||||| ||||||||| |
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| T |
18805481 |
atataagtattaccattttctgttatgtaaataacaggattgttatactttttctttatgtacaacagtagctcttgaatcccctttggataaacatata |
18805382 |
T |
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| Q |
105 |
accaagttgcagcctgcacatattgtttagtta |
137 |
Q |
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|||| || || ||| ||||||| |||||||| |
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| T |
18805381 |
gccaacttccaaactgtacatattatttagtta |
18805349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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