View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10409_low_14 (Length: 238)
Name: NF10409_low_14
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35733490 - 35733711
Alignment:
| Q |
1 |
agcaaagaaaataaggtaggatacatacaatnnnnnnngcaacctctcttcaagttcactgagccagtaaatcacaaagacactcccnnnnnnnttaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35733490 |
agcaaagaaaataaggtaggatacatacaataaaaaa-gcaacctctcttcaagttcactgagccagtaaatcacaaagacactcccaaaaaaattaaat |
35733588 |
T |
|
| Q |
101 |
tgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctacaagtaatttgttaatttcattctaccaagcaagctgattgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35733589 |
tgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctacaagtaatttgttaatttcattctaccaagcaggctgattgtta |
35733688 |
T |
|
| Q |
201 |
aaaaatttgtagcgatcacaaac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35733689 |
aaaaatttgtagcgatcacaaac |
35733711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University