View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_2 (Length: 457)
Name: NF10409_low_2
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 21 - 440
Target Start/End: Original strand, 5548934 - 5549353
Alignment:
| Q |
21 |
cagattgcggttgaacctttattttaaaccctgcctcgtaaggccaccgagattggagggctttattagtagtgtttactggcaattctatgttaatatt |
120 |
Q |
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| T |
5548934 |
cagattgcggttgaacctttattttaaaccctgcctcgtaaggccaccgagattggagggctttattagtagtgtttactggcaattctatgttaatatt |
5549033 |
T |
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| Q |
121 |
aaggatcatgaacgtgactgaaccgcgaccttaactgcgatttaaaaccttggtggtgatttttatgcaaatttggatatttttctttttattagattag |
220 |
Q |
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| T |
5549034 |
aaggatcatgaacgtgactgaaccgcgaccttaactgcgatttaaaaccttggtggtgatttttatgcaaatttggatatttttctttttattagattag |
5549133 |
T |
|
| Q |
221 |
gagtaaacatggtgtttggcttaccatgttcaannnnnnnnnnnnnncttgcttgtttacnnnnnnnnttgcattgaaattgattattctgattatttcg |
320 |
Q |
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| T |
5549134 |
gagtaaacatggtgtttggcttaccatgttcaattttttatttttttcttgcttgtttacaaaaaaaattgcattgaaattgattattctgattatttcg |
5549233 |
T |
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| Q |
321 |
tttaatcacaatttgtcggtgttctttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacag |
420 |
Q |
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| T |
5549234 |
tttaatcacaatttgtcggtgttctttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacag |
5549333 |
T |
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| Q |
421 |
ctgatggttatgttgtgagt |
440 |
Q |
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| T |
5549334 |
ctgatggttatgttgtgagt |
5549353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 329 - 440
Target Start/End: Complemental strand, 5543036 - 5542925
Alignment:
| Q |
329 |
caatttgtcggtgttctttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggt |
428 |
Q |
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||||||||| |||| |||||||| |||||||||||||| ||||||||| |||| ||||||||||| |||||| |||| ||||| |||||| |||||||| |
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| T |
5543036 |
caatttgtctatgttttttctttcggaagcttatgatccgcttgacccacatggaaatatcacaatcaaatggaatattataagttggacacctgatggt |
5542937 |
T |
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| Q |
429 |
tatgttgtgagt |
440 |
Q |
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|||||||||||| |
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| T |
5542936 |
tatgttgtgagt |
5542925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 441
Target Start/End: Complemental strand, 45211022 - 45210927
Alignment:
| Q |
346 |
ttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggttatgttgtgagtg |
441 |
Q |
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| T |
45211022 |
ttctttcagaagcttatgatccacttgatccaaacgggaatatcacaataacatgggacgttgtaagcttgacatctgacggttatgttgtgagtg |
45210927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 24488220 - 24488147
Alignment:
| Q |
346 |
ttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggaca |
419 |
Q |
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|||||||| ||||||||| || |||||| |||||| ||||||||||| |||||||||| ||||||| |||| |
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| T |
24488220 |
ttctttcacaagcttatgttcaacttgaaacaaatgaaaatatcacaatctaatgggatattataagcttgaca |
24488147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 5006198 - 5006285
Alignment:
| Q |
349 |
tttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggacagctgatggttatgttgt |
436 |
Q |
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||||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||||| |||||||||||||||| |
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| T |
5006198 |
tttcagatgcttatgacccacttgacccaaatggtaatatcacgatcaaatgggatattatacaatggacccctgatggttatgttgt |
5006285 |
T |
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