View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_3 (Length: 452)
Name: NF10409_low_3
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 32566669 - 32567092
Alignment:
| Q |
17 |
aagaagtaatgacccccttaggagggtaggnnnnnnngaaagattaaaaggcatgccttaattttcaatcagttgatggctaagagaaatgaatttcata |
116 |
Q |
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| T |
32566669 |
aagaagtaatgaccca-ttaggagggtaggaaaaaaagaaagattaaaaggcatgccttaattttcaatcagttgatggctaagagaaatgaatttcata |
32566767 |
T |
|
| Q |
117 |
gaaaacacaagccctgaaacaggtaaccatggaaaaagaaaccaatggtgctgcttgaaagcaacaccttagaaaattatgaattgtaggttctgaaagg |
216 |
Q |
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| T |
32566768 |
gaaaacacaagcactgaaacaggtaaccatggacaaagaaaccaatggtgctgcttgaaagcaacaccttagaaaattatgaattgtaggttctgaaagg |
32566867 |
T |
|
| Q |
217 |
gaacatcttctttgccctttgtgacaacagaattttcacaaacggtgctgatatattacaagttattcatgaattttggggtgaagcaaatagctgtttt |
316 |
Q |
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| T |
32566868 |
gaacatcttctttgccctttgtgacaacaggattttcacaaacggtgctgatatattacaagttattcatgaattttggggtgaagcaaatagctgtttt |
32566967 |
T |
|
| Q |
317 |
aagtccatatacacttgagactttcaccaccatattctacatcatgatcactgaggaaagaagnnnnnnnngaacctacaactacgaaatccaaagtcca |
416 |
Q |
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| T |
32566968 |
aagtccatatacacttgagactttcaccaccatattctacatcatgatcactgaggaaagaagaaaaaaaagaacctacaactacgaaatccaaagtcca |
32567067 |
T |
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| Q |
417 |
aaccattacttcacagattgttcat |
441 |
Q |
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| T |
32567068 |
aaccattacttcacagattgttcat |
32567092 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 1756937 - 1756901
Alignment:
| Q |
139 |
gtaaccatggaaaaagaaaccaatggtgctgcttgaa |
175 |
Q |
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| T |
1756937 |
gtaaccatggataaagaaaccaatggtgctgcttgaa |
1756901 |
T |
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