View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_5 (Length: 439)
Name: NF10409_low_5
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 1251832 - 1252269
Alignment:
| Q |
1 |
catactgcattatgcatttttcgttagcaaataaaatgaagaaacttgaaggaaaaacaagataaaactacataaagatcagaatcatatacctgccaat |
100 |
Q |
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| T |
1251832 |
catactgcattatgcatttttcgttagcaaataaaatgaagaaacttgaaggaaaaacaagataaaactacataaagatcagaatcatatacctgccaat |
1251931 |
T |
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| Q |
101 |
atacctaagagactttggtgctgaaccttcttgtggaaacttgcaattttctacgtatctacgaaacaaa--------------------aattagctca |
180 |
Q |
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| T |
1251932 |
atacctaagagactttggtgctgaaccttcttgtggaaacttgcaattttctacgtatctacgaaacaaagttccaaggattcatttgaaaattagctca |
1252031 |
T |
|
| Q |
181 |
attgttacatgttaactcaagaatcaggtctcaaatagtactcgataacagaatttccaaagcttacttggcggttggttcatcccagtttttagcattt |
280 |
Q |
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| T |
1252032 |
attgttacatgttaactcaagaatcaggtctgaaatagtactcgataacagaatttccaaagcttacttggcggttggttcatcccagtttttagcattt |
1252131 |
T |
|
| Q |
281 |
ccctcattcacagaataaatctttcctttctttggtatctatggaagtaacacgaacgttacagcaaataaagttcagaattgccttagtaaaaacctaa |
380 |
Q |
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| T |
1252132 |
ccctcattcacagaataaatctttcctttctttggtatctatggaagtaacacgaacgttacagcaaataaagttcagaattgccttagtaaaaacctaa |
1252231 |
T |
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| Q |
381 |
taaactttattttaattcatttaccaatttagctgcaa |
418 |
Q |
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| T |
1252232 |
taaactttattttaattcatttaccaatttagctgcaa |
1252269 |
T |
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