View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10409_low_6 (Length: 387)
Name: NF10409_low_6
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 36757357 - 36757715
Alignment:
| Q |
18 |
ctccgttgccattccaacctgtaaccataagcactacatcttcgatatccttctcctcatctaaccatgtgttttcgaacttgaacaaccttgtcattgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36757357 |
ctccgttgccattccaacctgtaaccataagcactacatcttcgatatccttctcctcatctaaccatgtgttttcgaacttgaacaaccttgtcattgt |
36757456 |
T |
|
| Q |
118 |
gcttctctcctactccaagtgtattgataccctttcagcagtaaattcattaaattgcaatccaatactgtttctttgaacccttaaattgccgaggagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36757457 |
gcttctctcctactccaagtgtattgataccctttcagcagtaaattcattaaattgcaatccaatactgtttctttgaacccttaaattgccgaggagg |
36757556 |
T |
|
| Q |
218 |
gtgttcaaattggcacgttttatcgtcatttgaaaggttatcattgaaatcttgcattatacaccatggaggattgttgtctgggtatatatttaacaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36757557 |
gtgttcaaattggcacgttttatcgtcatttgaaaagttatcattgaaatcttgcattatacaccatggaggattgttgtctgggtatatatttaacaaa |
36757656 |
T |
|
| Q |
318 |
tcaaaacaaagcaaatagaattccacactaaatggaactcatcccatcacttgccctat |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
36757657 |
tcaaaacaaagcaaatagaattccacactaaatggaactcatcccattacttaccctat |
36757715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University