View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10409_low_8 (Length: 342)
Name: NF10409_low_8
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 36310021 - 36310295
Alignment:
| Q |
16 |
aacctgtggctgggagttttccttcggtgcattttcatgttcctggccaaaatgcaaaaggagaggaaggaatatttgttttgatttccttacctactaa |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36310021 |
aacctggggctgggagttttccttcggtgcattttcatgttcctggccaaaatgcaaaaggagaggaaggaatatttgttttgatttccttacctactaa |
36310120 |
T |
|
| Q |
116 |
agttatgacagcttttgccaaagagttggatgacttaattgcagcaacaaattaagccaccttatctatttttagattgtctatttgaaaccgcaaataa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
36310121 |
agttatgacagcttttgccaaagagttggatgacttaattgcagcaacaaattaagccactttatctatttttagaatgtctatttgaaaacgcaaataa |
36310220 |
T |
|
| Q |
216 |
taaagtctgagagtggttacgttgtttgcattcaagctcnnnnnnnacgcaatggttggcttgttgtggatttggt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
36310221 |
taaagtctgagagtggttacgttgtttgcattcaagctctttgtttatgcaatggttggctt-ttgtggatttggt |
36310295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 324
Target Start/End: Original strand, 36310376 - 36310407
Alignment:
| Q |
293 |
taatctagaccatccattttgatattaatggt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36310376 |
taatctagaccatccattttgatattaatggt |
36310407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University