View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10409_low_9 (Length: 308)
Name: NF10409_low_9
Description: NF10409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10409_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 50552581 - 50552297
Alignment:
| Q |
19 |
attattcacttgtactctactatctatgtcaaacttataaagtatttgacaaaattttatatataccttttgttattttgaaatttaacccctctctccc |
118 |
Q |
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| T |
50552581 |
attattcacttgtagtctactatctatgtcaaacttataaagtatttgacaaaattttacatataccttttgttattttgaaatttaacccctctctccc |
50552482 |
T |
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| Q |
119 |
tcctctctaacaattgtcatattataagtaaaatatgttagccaataaattatatctcgtggataatttttattggtctcacatcatgtgggtaaattat |
218 |
Q |
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| T |
50552481 |
tactctctaacaattgtcatattataagtaaaatatgttagccaataaatcatctctcgtggataatttttattggtctcacatcatgtgggtaaattat |
50552382 |
T |
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| Q |
219 |
acacaattattcaaatgtaacttaggttgataatgttgtaagttctaaaacttatataaattgattgattggtatctctgcttct |
303 |
Q |
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|||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
50552381 |
acacaattctttaaatgtaacttaggttgataatgttctaagttctaaaactaatataaattgattgattggtatctcttcttct |
50552297 |
T |
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