View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1040R-Insertion-3 (Length: 930)

Name: NF1040R-Insertion-3
Description: NF1040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1040R-Insertion-3
NF1040R-Insertion-3
[»] scaffold0446 (3 HSPs)
scaffold0446 (500-928)||(9730-10173)
scaffold0446 (102-392)||(10399-10689)
scaffold0446 (387-478)||(10286-10377)
[»] chr4 (4 HSPs)
chr4 (500-900)||(56110892-56111309)
chr4 (101-392)||(56111535-56111826)
chr4 (104-389)||(56106978-56107263)
chr4 (387-478)||(56111422-56111513)
[»] chr6 (4 HSPs)
chr6 (627-928)||(26016633-26016950)
chr6 (627-709)||(26156241-26156323)
chr6 (108-171)||(26011476-26011539)
chr6 (102-171)||(24373813-24373882)
[»] chr8 (3 HSPs)
chr8 (9-103)||(22756054-22756148)
chr8 (103-181)||(1141882-1141960)
chr8 (500-542)||(1141771-1141813)
[»] chr5 (1 HSPs)
chr5 (105-171)||(13863095-13863161)
[»] chr3 (2 HSPs)
chr3 (103-149)||(54430952-54430998)
chr3 (108-149)||(54431771-54431812)


Alignment Details
Target: scaffold0446 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 500 - 928
Target Start/End: Complemental strand, 10173 - 9730
Alignment:
Q  500 atttacaagtgatttacattctatctttggaattaggatatttgttattatgttgagtggttcagccccactctaaagttgttgggagttttttggtatg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10173 atttacaagtgatttacattctatctttggaattaggatatttgttattatgttgagtggttcagccccactctaaagttgttgggagttttttggtatg 10074  T
Q  600 atatgatgtgctgattttttagctctcaggacattgaaaagaggatgaagtatccggattggtgaactctgcttaatatgtttgagttgttgctaggctc 699  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  10073 atatgatgtgctgattttttagctctcaggacagtgaaaagaggatgaagtatccggattgatgaactctgcttaatatgtttgagttgtt-ctaggctc 9975  T
Q  700 tcaagtttgtgattgaattttatcttaagtttgtggagatattactaaaggagtgtaagttattaggtggactgatagcaacagcttgatcatt------ 793  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||          
T  9974 ttaagtttgtgattgaattttatcttaagtttgtggagatattactaaaggattttaagttattaggtggactgatagcaacagcttgatcattaatctt 9875  T
Q  794 ------------aatataaatttttgtacagggagagaatctcataagtattgatatctttgcttttggaggatcaatgtattggtttatgaagcacgaa 881  Q
                ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |    
T  9874 acttatctagccaatataaatttttgtacagggagagaatctcataagtattgctatctttgcttttggaggattaatgtattggtttatgaagcacata 9775  T
Q  882 tactcctcaattaagcgtgtctctgtgtcagaacacgcgtcgatttt 928  Q
    |||||||||||||| |||| |||  |||||| |||||||||||||||    
T  9774 tactcctcaattaaccgtg-ctcgatgtcag-acacgcgtcgatttt 9730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 102 - 392
Target Start/End: Complemental strand, 10689 - 10399
Alignment:
Q  102 ttgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaattaataatgttactagttacc 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  10689 ttgagaaatgttattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatcatctatctaattaataattttactagttacc 10590  T
Q  202 ggttgtccctgttaacagggttatttcttttattttattttccccttattatttgttcaactgctctcacacgtatataaaactccagtgaaatcatctc 301  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10589 ggttgtccctgttaacaaggttatttcttttattttattttccccttattatttgttcaacttctctcacacgtatataaaactcaagtgaaatcatctc 10490  T
Q  302 ttccataaactactctactacttcacgacaaaataacaagaatatactacagagaccaacacatcaaactccatctttaccctgcaattgg 392  Q
    ||||  ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10489 ttccgcaaactactccactacttcacgacagaataacaagaatatacaacagagaccaacacatcaaactccatctttaccctgcaattgg 10399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 10377 - 10286
Alignment:
Q  387 aattgggaagcagtggtttggttggttgagaaatatataggacattaataacgtgagataagattcaattgtcgtctaattcataaaggaat 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  10377 aattgggaagcagtggtttggttggttgagaaatatataggacattaataacgtgaaatgagattcaattgtcgtctaattcataaaggaat 10286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 500 - 900
Target Start/End: Complemental strand, 56111309 - 56110892
Alignment:
Q  500 atttacaagtgatttacattctatctttggaattaggatatttgttattatgttgagtggttcagccccactctaaagttgttgggagttttttggtatg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56111309 atttacaagtgatttacattctatctttggaattaggatatttgttattatgttgagtggttcagccccactctaaagttgttgggagttttttggtatg 56111210  T
Q  600 atatgatgtgctgattttttagctctcaggacattgaaaagaggatgaagtatccggattggtgaactctgcttaatatgtttgagttgttgctaggctc 699  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  56111209 atatgatgtgctgattttttagctctcaggatagtgaaaagaggatgaagtatccggattgatgaactctgcttaatatgtttgagttgtt-ctaggctc 56111111  T
Q  700 tcaagtttgtgattgaattttatcttaagtttgtggagatattactaaaggagtgtaagttattaggtggactgatagcaacagcttgatcat------- 792  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||           
T  56111110 ttaagtttgtgattgaattttatcttaagtttgtggagatattactaaaggattttaagttattaggtggactgatagcaacagcttgatcattaatctt 56111011  T
Q  793 -----------taatataaatttttgtacagggagagaatctcataagtattgatatctttgcttttggaggatcaatgtattggtttatgaagcacgaa 881  Q
               |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  |    
T  56111010 acttatctagctaatataaatttttgtacagggagagaatctcataagtattgctatctttgcttttggaggattaatgtattggtttatgaagcacata 56110911  T
Q  882 tactcctcaattaagcgtg 900  Q
    |||||||||||||||||||    
T  56110910 tactcctcaattaagcgtg 56110892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 101 - 392
Target Start/End: Complemental strand, 56111826 - 56111535
Alignment:
Q  101 attgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaattaataatgttactagttac 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  56111826 attgagaaatgttattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatcatctatctaattaataattttactagttac 56111727  T
Q  201 cggttgtccctgttaacagggttatttcttttattttattttccccttattatttgttcaactgctctcacacgtatataaaactccagtgaaatcatct 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  56111726 cggttgtccctgttaacaaggttatttcttttattttattttccccttattatttgttcaacttctctcacacgtatataaaactcaagtgaaatcatct 56111627  T
Q  301 cttccataaactactctactacttcacgacaaaataacaagaatatactacagagaccaacacatcaaactccatctttaccctgcaattgg 392  Q
    |||||  ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  56111626 cttccgcaaactactccactactttacgacagaataacaagaatatacaacagagaccaacacatcaaactccatctttaccctgcaattgg 56111535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 104 - 389
Target Start/End: Original strand, 56106978 - 56107263
Alignment:
Q  104 gagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaattaataatgttactagttaccgg 203  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  56106978 gagaaatgcttttgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacatcatctatctaattaataattttactagttaccgg 56107077  T
Q  204 ttgtccctgttaacagggttatttcttttattttattttccccttattatttgttcaactgctctcacacgtatataaaactccagtgaaatcatctctt 303  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  56107078 ttgtccctgttaaaaaggttatttcttttattttattttccccttattatttgttcaacttctctcacacgtatataaaactcaagtgaaatcatctctt 56107177  T
Q  304 ccataaactactctactacttcacgacaaaataacaagaatatactacagagaccaacacatcaaactccatctttaccctgcaat 389  Q
    ||  ||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  56107178 ccgcaaactactccactacttaacgacagaataacaagaatatacaacagagaccaacacatcaaactccatctttaccctgcaat 56107263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 56111513 - 56111422
Alignment:
Q  387 aattgggaagcagtggtttggttggttgagaaatatataggacattaataacgtgagataagattcaattgtcgtctaattcataaaggaat 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  56111513 aattgggaagcagtggtttggttggttgagaaatatataggacattaataacgtgaaatgagattcaattgtcgtctaattcataaaggaat 56111422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 627 - 928
Target Start/End: Complemental strand, 26016950 - 26016633
Alignment:
Q  627 aggacattgaaaagaggatgaagtatccggattggtgaactctgcttaatatgtttgagttgttgctaggctctcaagtttgtgattgaattttatctta 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26016950 aggacattgaaaagaggatgaagtatccggattggtgaactctgcttaatatgtttgagttgttgctaggctctcaagtttgtgattgaattttatctta 26016851  T
Q  727 agtttgtggagatattactaaaggagtgtaagttattaggtggactgatagcaacagcttgatcat------------------taatataaatttttgt 808  Q
    ||||||||||||| |||||| |||||| | ||||||||| ||||||||||||||||||||||||||                  ||||||||||||||||    
T  26016850 agtttgtggagatgttactagaggagtttgagttattagatggactgatagcaacagcttgatcattaatcttacttatctagctaatataaatttttgt 26016751  T
Q  809 acagggagagaatctcataagtattgatatctttgcttttggaggatcaatgtattggtttatgaagcacgaatactcctcaattaagcgtgtctctgtg 908  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||  ||    
T  26016750 acagggagagaatctcataagtattgctatctttgcttttggaggattaatgtattggtttatgaagcacggatactcctcgatt-agcgtgtctcgttg 26016652  T
Q  909 tcagaacacgcgtcgatttt 928  Q
    |||| |||||||||||||||    
T  26016651 tcag-acacgcgtcgatttt 26016633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 627 - 709
Target Start/End: Complemental strand, 26156323 - 26156241
Alignment:
Q  627 aggacattgaaaagaggatgaagtatccggattggtgaactctgcttaatatgtttgagttgttgctaggctctcaagtttgt 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26156323 aggacattgaaaagaggatgaagtatccggattggtgaactctgcttaatatgtttgagttgttgctaggctctcaagtttgt 26156241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 26011476 - 26011539
Alignment:
Q  108 aatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtca 171  Q
    |||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||    
T  26011476 aatgctattgacaaactctctgtcaaactctttttaacacactcccatatatgaagccacgtca 26011539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 24373813 - 24373882
Alignment:
Q  102 ttgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtca 171  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| | | || ||||||||||||||    
T  24373813 ttgagaaatgctatttacacactctctgtcaaactccttttaacacactcccatatatgaagccacgtca 24373882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 22756148 - 22756054
Alignment:
Q  9 tatatgagacaaactatttgatcttaaaataattcaaatcaattttgtgaattgtataagttaactgatggagcttatttgttaatatacccatt 103  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  22756148 tatatgagacaaactatttgatctaaaaataattcaaatcaattttgtgaattgtacaacttaactggtggagcttatttgttaatatacccatt 22756054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 1141960 - 1141882
Alignment:
Q  103 tgagaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtcatctatctaat 181  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  1141960 tgagaaatgttattgacaaattctctgtcaaactctttttaacacaccctcttacgtgaaaccacgtcatatatctaat 1141882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 542
Target Start/End: Complemental strand, 1141813 - 1141771
Alignment:
Q  500 atttacaagtgatttacattctatctttggaattaggatattt 542  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  1141813 atttacaagtgatttacattctatatttggaattaggatattt 1141771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 13863095 - 13863161
Alignment:
Q  105 agaaatgctattgacaaactctctgtcaaactctttttaacacaccctcttacatgaagccacgtca 171  Q
    |||||||||||||| ||||| | |||||||||| |||||| |||| | | ||||| |||||||||||    
T  13863095 agaaatgctattgaaaaactatatgtcaaactccttttaatacactcccatacataaagccacgtca 13863161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 54430952 - 54430998
Alignment:
Q  103 tgagaaatgctattgacaaactctctgtcaaactctttttaacacac 149  Q
    |||| |||||||  |||||||||||||||| ||||||||||||||||    
T  54430952 tgagcaatgctaaggacaaactctctgtcacactctttttaacacac 54430998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 54431812 - 54431771
Alignment:
Q  108 aatgctattgacaaactctctgtcaaactctttttaacacac 149  Q
    |||||||| |||||||||||||||| ||||||||| ||||||    
T  54431812 aatgctatggacaaactctctgtcacactctttttgacacac 54431771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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