View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1040R-Insertion-5 (Length: 508)
Name: NF1040R-Insertion-5
Description: NF1040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1040R-Insertion-5 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 508
Target Start/End: Complemental strand, 41218951 - 41218452
Alignment:
| Q |
9 |
gttcacagatatctaaatggaggagaaacaagagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagttcaatttcatgtttac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41218951 |
gttcacagatatctaaatggaggagaaacaaaagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagttcaatttcatgtttac |
41218852 |
T |
|
| Q |
109 |
gtcagtttctagtatgtctctttagtcagtagcaagaggaacatagtggtatatnnnnnnnggataaatttgctttataagattctaggatgctaatagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41218851 |
gtcagtttctagtatgtctctttagtcagtagcaagaggaacatagtggtatataaaaaaaggataaatttggtttataagattctaggatgctaatagt |
41218752 |
T |
|
| Q |
209 |
ttttcctaatcattcaactgtttctttacaataagccaaatataaattgtttttctgctagatcatgttatcgtgcagtgttttctttagtatatatatg |
308 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41218751 |
ttttcttaatcattcaactgtttctttacaataagccaaatataaattgtttttctgctagatcatgttatcgtgcagtgttttctttagtatatatatg |
41218652 |
T |
|
| Q |
309 |
atggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaaataacaaaagtcaattagaaactactgtctgagattctgttact |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41218651 |
atggaaattgcattcattcttgatatgaattaatgaaattatcactgcaaaagtaaataacaaaagtcaattagaaactactgtctgagattctgttact |
41218552 |
T |
|
| Q |
409 |
tcgactcatagttatacttgttactagagatgaaaaataggactcccatttatgctataagctagcttattaatggctaggctttagaagttctctactt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41218551 |
tcgactcatagttatacttgttactagagatgaaaaataggactcccatttatgctataagctagcttattaatggctaggctttagaagttctctactt |
41218452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 41224517 - 41224398
Alignment:
| Q |
32 |
agaaacaagagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagtt-caatttcatgtttacgtcagtttctagtatgtctctt |
130 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
41224517 |
agaagcaagagactatcttcctactgaaagaatgatatcagaaaacg------ctgtgagtaacaatttcatgtt-acatcagtttctagtatgtctctt |
41224425 |
T |
|
| Q |
131 |
tagtcagtagcaagaggaacatagtgg |
157 |
Q |
| |
|
| ||||||||| |||| |||| ||||| |
|
|
| T |
41224424 |
ttgtcagtagccagagaaacacagtgg |
41224398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 41226103 - 41226040
Alignment:
| Q |
16 |
gatatctaaatggaggagaaacaagagactatctttctactgagagaatgatatcagaaaacaa |
79 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| | ||||| |||||||||||||| |
|
|
| T |
41226103 |
gatatctaaatggaggagaaacaggagactatcttcctactcaaagaatcatatcagaaaacaa |
41226040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 170 - 342
Target Start/End: Complemental strand, 41224327 - 41224157
Alignment:
| Q |
170 |
ggataaatttgctttataagattctaggatgc-taatagtttttcctaatcattcaactgtttctttacaataagccaaatataaattgtttttctgcta |
268 |
Q |
| |
|
||||||||||| ||||||||||| || || || ||| |||||||| || | ||||| ||||||| || |||||||||||||||| |||| ||| |||| |
|
|
| T |
41224327 |
ggataaatttggtttataagattgtatgaagcataaaagtttttcttacttattcagctgtttccttgcaataagccaaatatatattg-tttgctgcat |
41224229 |
T |
|
| Q |
269 |
gatcatgttatcgtgcagtgttttctttagtatatatatgatggaaattgcattcattcttgatatgaattaat |
342 |
Q |
| |
|
|| | ||||| ||| || ||| ||| || | ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
41224228 |
tattaggttatggtgttgtttttgcttcag--tgtatatgatggaaattacattcattcttgatatgaaataat |
41224157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 476
Target Start/End: Complemental strand, 41224069 - 41224023
Alignment:
| Q |
430 |
tactagagatgaaaaataggactcccatttatgctataagctagctt |
476 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41224069 |
tactagaaatgaaaaatgggattcccatttatgctataagctagctt |
41224023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 554881 - 555005
Alignment:
| Q |
32 |
agaaacaagagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagtt-caatttcatgtttacgtcagtttctagtatgtctctt |
130 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
554881 |
agaaacaagagactatcttcctactgagagaatgatatcagaaaacaaaaaca--ttgagttataatttcatgtttgtatcagtttctagtatgtctctt |
554978 |
T |
|
| Q |
131 |
tagtcagtagcaagaggaacatagtgg |
157 |
Q |
| |
|
||||| ||| | ||||||||| |||| |
|
|
| T |
554979 |
tagtcggtaagaggaggaacattgtgg |
555005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 1596908 - 1596993
Alignment:
| Q |
32 |
agaaacaagagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagttc-aatttcatgtttacgtcagttt |
116 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
1596908 |
agaaacaagagactaccttcctactgacagaatgatatcagaaaacaaaaacactgtgagttctaatttcatgtttagatcagttt |
1596993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 1597707 - 1597799
Alignment:
| Q |
32 |
agaaacaagagactatctttctactgagagaatgatatcagaaaacaagaacactgtgagttc-aatttcatgtttacgtcagtttctagtat |
123 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
1597707 |
agaaacaagagactatcttcctactgacagagtgatatcagaaaacaaagacaccgtgagttctaatttcatgttcacatcagtttctagtat |
1597799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University