View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1040R-Insertion-6 (Length: 458)
Name: NF1040R-Insertion-6
Description: NF1040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1040R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 54952948 - 54953166
Alignment:
| Q |
9 |
gatccttcttcaaaacagcataattttctactcatcattagttactttgccaagtatgaataattctatagatggttaatttcaaggatttatatataca |
108 |
Q |
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| T |
54952948 |
gatccttcttcaaaacagcatgattttctac--atcattagttactttgccaagtatgaataattctatagatggttaatttcaaggatttatatataca |
54953045 |
T |
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| Q |
109 |
taggccattatgtacatgggaatgccagcatta-tttattagtcttattatagcaagggtccctgcaaggtttattctgtaacccttcaccgtgtgggaa |
207 |
Q |
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| T |
54953046 |
taggccattatgtacatgggaatgccagtattattttattagtcttattatagcaaaggtccctgcaaggtttattctgtaacacttcaccgtgtgggga |
54953145 |
T |
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| Q |
208 |
agtttttatctagtttgataa |
228 |
Q |
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||||||||||||||||||||| |
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| T |
54953146 |
agtttttatctagtttgataa |
54953166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 262 - 458
Target Start/End: Original strand, 54953204 - 54953404
Alignment:
| Q |
262 |
atctaattgtattgtaatatatatgatgat--atccacttaattgtaatataagcttatcttatccacttaatttctacaactatgtgtttggtaagatg |
359 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
54953204 |
atctaattgtattgtaatatatatgatgatgtatccacttaattgtaatataagcttat----tccacttaatctctacaactatgtgtttggtaagatg |
54953299 |
T |
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| Q |
360 |
gaagttcaaagaaacatcaaatcaattcgtactgtatgcagatatttatttgttttcactagattcctata------tgtaattattcttcaaatagaag |
453 |
Q |
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| T |
54953300 |
gaagttcaaagaaacatcaaatcaattcgtactgtatgcagatatttatttgttttcactagattcctatatgtccttgtaactattcttcaaatagaag |
54953399 |
T |
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| Q |
454 |
tttag |
458 |
Q |
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||||| |
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| T |
54953400 |
tttag |
54953404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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